Query= MSMg01no176_m14.b1 MSMg01no176_m14.b1 CHROMAT_FILE:
MSMg01no176_m14.b1 PHD_FILE: MSMg01no176_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:58 2005
(644 letters)
>mm_chr12_39968346_39969389
Length = 1044
Score = 750 bits (388), Expect = 0.0
Identities = 412/420 (98%)
Strand = Plus / Plus
Query: 223 aaagctaagaatataaaataattccatgtaataaatttccagagaccacaagtagaggtg 282
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaagctaagaatatgaaataattccatgtaataaatttccagagaccacaagtagaggtg 482
Query: 283 gggatgaaagaaaaacctccgtaggagtgtggattccttttattcatctttggaggtaaa 342
||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||
Sbjct: 483 gggatgaaagaaaaacctcagtaggagtgtggattccttttaagcatcttttgaggtaag 542
Query: 343 attgtatgtttaaccacacatgctggtagactttgggaaaagataagaggataattattt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 attgtatgtttaaccacacatgctggtagactttgggaaaagataagaggataattattt 602
Query: 403 ctttgtaaaattttgttttgcgtgagcaatataattttctgatacccagaacatgaacac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctttgtaaaattttgttttgcgtgagcaatataattttctgatacccagaacatgaacac 662
Query: 463 tgagttcataatttattctgaattgagtggcataggacttgccttgccttagtttcttac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tgagttcataatttattctgaattgagtggcataggacttgccttgccttagtttcttac 722
Query: 523 tgggttaacacttgtttctttctcttcagaagctatttcaagcacggtgcttgagggaag 582
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tgcgttaacacttgtttctttctcttcagaagctatttcaagcacggtgcttgagggaag 782
Query: 583 caagcagtgccactttacagaagcatctgaatcaggaaagggatcttatagggaaataaa 642
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 783 caagcagtgccactttacagaagcatctgaatcaggaaagggatcttatggggaaataaa 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_m14.g1 MSMg01no176_m14.g1 CHROMAT_FILE:
MSMg01no176_m14.g1 PHD_FILE: MSMg01no176_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:58 2005
(643 letters)
>mm_chr12_40105844_40106880
Length = 1037
Score = 1139 bits (589), Expect = 0.0
Identities = 628/643 (97%), Gaps = 6/643 (0%)
Strand = Plus / Minus
Query: 1 gtttctttctcctgctccactagctctcatgcaaccaactattttaaaagttttttccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gtttctttctcctgctccactagctctcatgcaaccaactattttaaaagttttttccat 778
Query: 61 tagatataaattttaggattttgctaaatattttgtttctcttacatagttcaatgccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tagatataaattttaggattttgctaaatattttgtttctcttacatagttcaatgccct 718
Query: 121 gtgtttatttttaacatttaacatatgcatacaagtacagtttcttttacatttttatct 180
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 717 gtgtttatttttaacatctaacatatgcatacaagtatagtttcttttacatttttatct 658
Query: 181 ttttatggagaatctatattttttaaaccacaatggtattcatgttttgttgaggtatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttttatggagaatctatattttttaaaccacaatggtattcatgttttgttgaggtatac 598
Query: 241 ctctacttaggttatttttatttctttttgggtcttttctacttaagctagcccatgtga 300
||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct: 597 ctctacttaggttattttt----ctttttgggtcttttctacataagctagctcatgtga 542
Query: 301 atttaattgcaaatttgatattctccacattcatttcacaatcttcagaatatcaaatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atttaattgcaaatttgatattctccacattcatttcacaatcttcagaatatcaaatat 482
Query: 361 atgttattttgattcagaaaaatcaacaaagcagccatctcttaaaattccagtctttta 420
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 481 atgttatttggattcagaaaaatcaacaaagcagccatctcttaag-ttccagtctttta 423
Query: 421 attgataacatagcattctgttttatttaagacgagaaaataatgttttccaagaaaaga 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 attgataccatagcattctgttttatttaagacgagaaaataatgttttccaagaaaaga 363
Query: 481 tgtgtaattttcattttttttcttgcaattgtacagtaatgggatatctagctttaaata 540
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 362 tgtgtaattttcattttttt-cttgcaattgtacagtaatgggatatctggctttaaata 304
Query: 541 attcagaatctattttatctgaattcacacttttgcttatgctgctggaattaaagtcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 attcagaatctattttatctgaattcacacttttgcttatgctgctggaattaaagtcag 244
Query: 601 taaagtaagcagtctcaagattcctatataagctatgtgcaga 643
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 243 taaaataagcagtctcaagattcctatataagctatgtgcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1037
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1027
Effective search space: 650091
Effective search space used: 650091
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
