BAC Information

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BAC

Clone NameMSMg01-176M21
Chromosome12 (Build37)
Map Location 45,162,806 - 45,163,353
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081
Downstream geneLOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176M21.T7 (MSMg01no176_m21.b1)MSMg01-176M21.TJ (MSMg01no176_m21.g1)
ACCAG371392AG371393
length1,1681,096
length of high quality
(start - end)
549 (136 - 684)607 (127 - 733)
definitionCHROMAT_FILE: MSMg01no176_m21.b1 PHD_FILE: MSMg01no176_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:01 2005CHROMAT_FILE: MSMg01no176_m21.g1 PHD_FILE: MSMg01no176_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTTTTTTNNNAATACCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGAATCCACAGTCACGCCTTTAAGACCCCTGTAAAAC
CAAAGAGCACTAGAAGGGTGACTATAATTTCCCGGTAAATGGAGCATCTT
CCAGACAAAACTGAAACATTTTCAATTGTTCCATTTCTTTCTCTTTCATT
TTCCTGCCGTGTTCCTTCAGCTTTCCTATAGGCAGAAAGAGGAGCATCCA
TTCCTAATTCTCTTCTCCCTTCACAAAGCATAACTGCCCTTGGGTTTGTT
TTCTTTATCTCAGAGAATATTTTTTTAATTCATTAAAATTCTCTTTCTCC
ATCCCCTTCCACTCTGTCCCATCCTTTCTTCTACACTCTTGTCTGATACA
CATACACTTGCTACTAAACTTCTTATCTCTACCTAGTATTCAGAAGAGGC
TGAATTAAAGATATGATAATTGTAGTAAAAAAAGGTAAATCAAAGAAAAA
ATTGATGACACGGATAAATGGGTAAAACATGAAACAGGCTCACAGCCTAC
CCAAGTTCAAACAACTTTTGCCCTGTTCATGGCAGATGGTCCAATCCATT
AAATCTGCCTATTAGCTAGCTTCCCTTTGGCAACTATCATCTATGATGAG
TTGATTTATAAACTTTGTTTGTTGTTTGCTGCACTTGGACTTGGCACTAC
TGTCTAGAACAAAGCATTAAACTGTGTCTATTGGTCTATTGACTCATACC
TATTGAACTAAAAAAAAAAAAAAGCAGTGGCACTCTCCAAACATAACATA
CGATTAATATCAAGACCAAATACTTTTTAAATACTTTGTTTAACAAGAAA
GGATGGCACTATTTTACTTTTAAAGTATTGGTAGCAAGGCATGGTGACAT
ATCCCCTTAATTTCAAAACTCATGGACAGAGACTGGCATGTTCTCTGTGA
GTATGAAACCATCCTTTGTCTACCTAATGAACATCTAGACCCACCCAGGG
AATACCTAGTGAGGAACTGAAAACCTGTTCCAAAACCCAATAATGGGTAT
TTTTCCAAAAGTCCCCTAATAATTTTATATTAAAAAAAAGGGGGGGTGAA
ATGTGGGCGGGAAAAAAAAATATAACCCCGGGGAATTTTAAAAATGTGGT
GTGCTTACCAAATAAATT
CCGTCTCTTTTTAACCCATGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTATAAAGCCCGATTTTACTTTTG
AGAACTATGAAGTGCCCCTTCATGTCTTTTTTGATAACTTTGGGTTGGAA
GTTGATTTTATTTGATATTAGAATGGCTACTCCAGCTTGTTTCTTCGGAC
CATTTGCTTGGAAAATTGTTTTCCAGCCTTTTACTCTGGGGTAATGTCTG
TCTTTTTCCCTGAGGTGGGTTTCCTATAAGCACCAAAATGTTGTGTCCTG
TTTGTGTAACCAGTTTATTAGTCTATGTCTTTTTATTGGGGAATTGAATC
CATTGATGTTAAGAGAAATTAAAGAAAAGTAATTGTTGCTTCCTGTTATT
TTTGTTGTTAAAGTTGGGGTTCTGTTTTTGTGGCTGTCTTCTTTTAGGTT
TGTTGAAGGATTACTTTCTTGCTCTTTCTAGGGCATAGTTTCCATCTTTG
TGTTGGTGTTTTCCCTGTATTATCCTTTGAAGGGCTGGATTCGTGGAAAG
ATATTGTGTGAATTTGGTTTTATCATGGAATACTTTGGTTTCTCCATCTA
TGGTAATTGAGTATTTTGCTAGGTATAGTAGCCTGGGCTGGCATTTGTGT
TCTCTTAGGGTCTGCACAACATATGTCCAGGATCTTATGGCTTTTATAGT
CTCTGGTGAGAAGTCTGGTGTAATTCTAATAGGTCTGGCTTTATATGTTA
CTTGACCTTTTTTCCCCTACTGCTTTTATTATTCTATCTTTATTTAGCGT
ATTTTGTGTTCTGAATATTATGTGTCGGGAGGAATTTCTTTTCTGGTCCA
GTCTCTTTGGAGTTCTGTAAGCTTTCTGTATGTTCATGCGCATCTCTTTT
CCTAAGTTAACGAAATTTCCCTTCTATAATTCTGTTGAAAAAATTTTAAG
GGGCCCTTTTAGTTTGAAAATTTTTCTTTTTTACATTACACCCTTTTAAC
CTGGTAAGCTGGGTTCTCTTCTCCCTGGTTCTCCCCGAAATTTTCTGCGG
GTGGTTCTTTATTTTTTAGAACTTTTTTTTTCTCCTTCTTTAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_m21.b1 MSMg01no176_m21.b1 CHROMAT_FILE:
MSMg01no176_m21.b1 PHD_FILE: MSMg01no176_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:01 2005
         (549 letters)



>mm_chr12_45162606_45163554
          Length = 949

 Score = 1029 bits (532), Expect = 0.0
 Identities = 544/548 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatggagcatcttccagacaaaactgaaacattttcaattgttccatttctttctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatggagcatcttccagacaaaactgaaacattttcaattgttccatttctttctctt 260

                                                                       
Query: 61  tcattttcctgccgtgttccttcagctttcctataggcagaaagaggagcatccattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattttcctgccgtgttccttcagctttcctataggcagaaagaggagcatccattcct 320

                                                                       
Query: 121 aattctcttctcccttcacaaagcataactgcccttgggtttgttttctttatctcagag 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 aattctcttctcccttcacaaagcatgactgcccttgggtttgttttctttatctcagag 380

                                                                       
Query: 181 aatatttttttaattcattaaaattctctttctccatccccttccactctgtcccatcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatttttttaattcattaaaattctctttctccatccccttccactctgtcccatcct 440

                                                                       
Query: 241 ttcttctacactcttgtctgatacacatacacttgctactaaacttcttatctctaccta 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ttcttctacactcttgtctgatacacatacacttactactaaacttcttatctctaccta 500

                                                                       
Query: 301 gtattcagaagaggctgaattaaagatatgataattgtagtaaaaaaaggtaaatcaaag 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtattcagaagaagctgaattaaagatatgataattgtagtaaaaaaaggtaaatcaaag 560

                                                                       
Query: 361 aaaaaattgatgacacggataaatgggtaaaacatgaaacaggctcacagcctacccaag 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaagttgatgacacggataaatgggtaaaacatgaaacaggctcacagcctacccaag 620

                                                                       
Query: 421 ttcaaacaacttttgccctgttcatggcagatggtccaatccattaaatctgcctattag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaaacaacttttgccctgttcatggcagatggtccaatccattaaatctgcctattag 680

                                                                       
Query: 481 ctagcttccctttggcaactatcatctatgatgagttgatttataaactttgtttgttgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctagcttccctttggcaactatcatctatgatgagttgatttataaactttgtttgttgt 740

                   
Query: 541 ttgctgca 548
           ||||||||
Sbjct: 741 ttgctgca 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)