TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAATATATGAGCCTAAAGGGGTCATTCATTCCAACAATAGGGCTA
TACATAGCTGTAAAAGTATATTTTATTTTCCTGATGTAATTGTCCTAGAG
ACTTACTGCTGAATAAATTCACCCTTTCTAGTACTTTCTAAACTCTGCCC
GACTGGTTCAGCTAGCTCTTCTGCTCAAACGCCTCTCCAAGCTAACTATT
CAGCTGGCTTCTCTCAGCTTCTCACTAAATTGTTCTGCTTGGCCTCAAAC
TAACTCTGGCAATTTGTTCTAGTCTTCTGGCTTCTTCTTACTTTCTGGCT
TCAACTGCTACTGGTGACCTACTCTGAATTGCATCAGCTCACAAACAAAC
TCAACTCCACTGTACTGCACTCATTGTACTGACTCCCAACTGACTGACTC
TACTCTGCTTGAGTGAATTCAACTTACTCAACAGAACAGAGAGGTAAGGG
NGGTAGGGGATGGCTGAGAGATTCTGAGGGATATAGGAGGNNAAATNNNN
NTNNNNNNNNNNNNNNNNNNNTTTTNATTTTGGGTTGTTTTTTTTTTTTT
TTTNNTGGTNNGGGTTTNGNNGTTTNGGTGTGNTATTTTTGGTTTGTGGG
TGTGGTTTTATGGTTTGTTGGTTTGGTTTGGGTTTTTTGTGTGTTTATTT
GAGAAGTAGATTATTTTTTATTAAGAAATTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCACCAAATTGGTTTCTGTTGTG
AGTTTTTACTACATTAGTACCAACAGTGCTCCAAGAGGAAGAACTTGACA
TAAACAAGTTTTTGACTCCTAAAATTCGGAGCTCATCGAACATCATTTCA
GCATCTTTGCCCTGGTCCTAGTCAAACTAAACCACAAGGCTAGATTTCAA
GTGACAGAGAGAAATTTTCCCCTGGAAGGGAGAAGGAGGACAGTCCCAAG
CATCCAGAATCAAGCATCCAGGTAAAAGATGAATCTGAATTATTGAAAAC
TTCTTTTGATATATTCAGTGACAGTAAAGTAATTATAAATATGCTTGGCA
CTTATTATAAGCATTTTAGTAATTATCTGTATTGCCTGTTATGTTACATG
ACCTTTGAGAAGGTAGTCTATTAAAAAGCTATAAACTCAAGAAGTAGTTC
ATTCTTTCTGAGTGTTAATAGGGAATCTATAATTGTGTTTGAACGAGTAA
TGGCTAAAAGCAATATAAAGGCAAACCTTATTTATTTTGATCATTCATAA
ATTTCCAGCACTGTACCAAGGGCTGAAACATAAAGAGACACCATCCAACA
CATAATGAATGAATGAGTGAATGAACACCTAGTGAAATGGCTACACAGAA
ATGAAGGCCTTGCTCATATACATAGACCTGTGAATT

Query= MSMg01no177_f05.b1 MSMg01no177_f05.b1 CHROMAT_FILE:
MSMg01no177_f05.b1 PHD_FILE: MSMg01no177_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:52 2005
         (495 letters)



>mm_chr12_39211064_39211958
          Length = 895

 Score =  658 bits (340), Expect = 0.0
 Identities = 360/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 129 ctttctagtactttctaaactctgcccgactggttcagctagctcttctgctcaaacgcc 188
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 895 ctttctagtactttctaaactctgcccaactggttcagctagctcttctgctcaaacgcc 836

                                                                       
Query: 189 tctccaagctaactattcagctggcttctctcagcttctcactaaattgttctgcttggc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tctccaagctaactattcagctggcttctctcagcttctcactaaattgttctgcttggc 776

                                                                       
Query: 249 ctcaaactaactctggcaatttgttctagtcttctggcttcttcttactttctggcttca 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ctcaaactaactctggcaatttgttctagtcttctggcttcttcttactttctggcttca 716

                                                                       
Query: 309 actgctactggtgacctactctgaattgcatcagctcacaaacaaactcaactccactgt 368
           |||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 715 actgcttctggcgacctgctctgaactgcatcagctcacaaacaaactcaactccactgt 656

                                                                       
Query: 369 actgcactcattgtactgactcccaactgactgactctactctgcttgagtgaattcaac 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 actgcactcattgtactgactcccaactgactgactctactctgcttgagtgaattcaac 596

                                                                       
Query: 429 ttactcaacagaacagagaggtaagggnggtaggggatggctgagagattctgagggata 488
           ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 595 ttactcaacagaacagagaggtaaggggggtaggggatggttgagagattctgagggata 536

                  
Query: 489 taggagg 495
           |||||||
Sbjct: 535 taggagg 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no177_f05.g1 MSMg01no177_f05.g1 CHROMAT_FILE:
MSMg01no177_f05.g1 PHD_FILE: MSMg01no177_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:53 2005
         (651 letters)



>mm_chr12_39142046_39143096
          Length = 1051

 Score = 1220 bits (631), Expect = 0.0
 Identities = 646/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaccaaattggtttctgttgtgagtttttactacattagtaccaacagtgctccaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaccaaattggtttctgttgtgagtttttactacattagtaccaacagtgctccaaga 260

                                                                       
Query: 61  ggaagaacttgacataaacaagtttttgactcctaaaattcggagctcatcgaacatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ggaagaacttgacataaacaagtttttgactcctaaaattcggagctcatcaaacatcat 320

                                                                       
Query: 121 ttcagcatctttgccctggtcctagtcaaactaaaccacaaggctagatttcaagtgaca 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagcatcattgccctggtcctagtcaaactaaaccacaaggctagatttcaagtgaca 380

                                                                       
Query: 181 gagagaaattttcccctggaagggagaaggaggacagtcccaagcatccagaatcaagca 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagaaatgttcccctggaagggagaaggaggacagtcccaagcatccagaatcaagca 440

                                                                       
Query: 241 tccaggtaaaagatgaatctgaattattgaaaacttcttttgatatattcagtgacagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaggtaaaagatgaatctgaattattgaaaacttcttttgatatattcagtgacagta 500

                                                                       
Query: 301 aagtaattataaatatgcttggcacttattataagcattttagtaattatctgtattgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtaattataaatatgcttggcacttattataagcattttagtaattatctgtattgcc 560

                                                                       
Query: 361 tgttatgttacatgacctttgagaaggtagtctattaaaaagctataaactcaagaagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttatgttacatgacctttgagaaggtagtctattaaaaagctataaactcaagaagta 620

                                                                       
Query: 421 gttcattctttctgagtgttaatagggaatctataattgtgtttgaacgagtaatggcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gttcattctttctgagtgttaatagggaatctataattgtgtttgaatgagtaatggcta 680

                                                                       
Query: 481 aaagcaatataaaggcaaaccttatttattttgatcattcataaatttccagcactgtac 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagcaatataaaggcaaaccttgtttattttgatcattcataaatttccagcactgtac 740

                                                                       
Query: 541 caagggctgaaacataaagagacaccatccaacacataatgaatgaatgagtgaatgaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caagggctgaaacataaagagacaccatccaacacataatgaatgaatgagtgaatgaac 800

                                                              
Query: 601 acctagtgaaatggctacacagaaatgaaggccttgctcatatacatagac 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acctagtgaaatggctacacagaaatgaaggccttgctcatatacatagac 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)