BAC Information

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BAC

Clone NameMSMg01-178M21
Chromosome12 (Build37)
Map Location 43,161,038 - 43,266,427
singlet/doubletdoublet
Overlap genenone
Upstream geneLrrn3, Immp2l, EG638533
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178M21.T7 (MSMg01no178_m21.b1)MSMg01-178M21.TJ (MSMg01no178_m21.g1)
ACCAG372782AG372783
length708729
length of high quality
(start - end)		660 (46 - 705)280 (76 - 355)
definitionCHROMAT_FILE: MSMg01no178_m21.b1 PHD_FILE: MSMg01no178_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:40 2005CHROMAT_FILE: MSMg01no178_m21.g1 PHD_FILE: MSMg01no178_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,161,038 - 43,161,693)(43,266,148 - 43,266,427)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGTCAATCTGGGGTACGGAGTGAATTTAAAGCCAGCCTGGAAA
AATAAAGACCCTGGTTCAAAATAGTTGACTTGAAAGGGCTACAAATAAAA
CATCTGAGCATGTACAAGTCTCAGAACAATATGCACAGCACAGCAAAATA
AATAATAAATAAAAATGTAACACAACAAATATTTTTACTAACATGTGCTA
TAATACACATCAAAAGTATAGCTCTGAGGTCTTAACTTTTAGCAAAATAT
AAATAGCTACCGTCTTCATAATTTCTTTCACACAGTGAAGGTCTTTCATG
TATCATCTTGTTTATTTGAACAGACACCATCTAATCCCACTATTTTGTTT
GTTTAGACTTCTGTGTATTGACTCTTCCATCCTTCTGTAATGAGTAAATT
AGCATAATTTTTAAAAAATCACAACATATCACATGGTTGAACCAAACTCA
GAAACTAAATAATTGCTATCTAAATAAAGCATTGAGTGAAAGGAAACAAT
AATATTTTTATTCATAGAAACTAGTTTAGAATGTGATTAATTCAATGTTG
CTTCAAACTGCTAAGTAGCCATTAATAAAATGTCAGTTAAACGAATTAAC
TCAATGTTGTGAATGCTACACTTATGAGTTTTGAATGTTGCACATACCTC
AGAAGTAT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGAAGTGTTTTCTGAATTTTCAG
AAGGGTTTTTATACTATTTCGATATAGCTTGCAGGTTTTCTAAGGGTCAT
TTAGGTTGTAGTGACTGCTCAATAGTTGTAAGTTTTCCAATACACATATA
GAGTATACTTTTCAGTTTATTTATGTCTTTTTAATCTCAGTAATTTTTGT
AGTTTTTACTGTGGTATTTCCTCAGTATTTAGTAGTTTTTTTATATTCTT
GGAAATACAAAATTCTTCATAATTTCCCTTTCAAAAATGTTCATGGCTAA
TAGTTGTTTATGGCAGCTCATTCGCGTTGTGTTGTTTTGTTTTGTTTTGA
TTTTTANCACCTCCCCACAAAATAAATAACCATTTACGGGTTTGCGGGAT
TACTACCATTTTTGCTTGTGTGGATTTATAATGAGCGTATATGTATCATA
CTGCCTTATTCGTTCGCTATTAATCCACTTTCCTCCTTTTTCTACCTACT
TTTATTACCACTATTTTTTACCCCTTAAACTTTACAAATTTTTGTTTTCA
TACGTGCCTCGGTGTTATCCACCTACTCCCTTTCACCTATTCTTCCTGTT
CTTTTTATTTTTCCTTTCACTAGTAACAAACAAACCCCTATTTATCGCTC
CCTTTTTTTTTCCCCTCTCCTCTTCCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_m21.b1 MSMg01no178_m21.b1 CHROMAT_FILE:
MSMg01no178_m21.b1 PHD_FILE: MSMg01no178_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:40 2005
         (660 letters)



>mm_chr12_43160834_43161893
          Length = 1060

 Score = 1237 bits (640), Expect = 0.0
 Identities = 652/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggtcaatctggggtacggagtgaatttaaagccagcctggaaaaataaagac 64
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcaaggtcagtctggggtacggagtgaatttaaagccagcctggaaaaatcaagac 264

                                                                       
Query: 65  cctggttcaaaatagttgacttgaaagggctacaaataaaacatctgagcatgtacaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctggttcaaaatagttgacttgaaagggctacaaataaaacatctgagcatgtacaagt 324

                                                                       
Query: 125 ctcagaacaatatgcacagcacagcaaaataaataataaataaaaatgtaacacaacaaa 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 ctcagaacaatatgcacagcacagcaaaattaataataaataaaaatgtaacacaacaaa 384

                                                                       
Query: 185 tatttttactaacatgtgctataatacacatcaaaagtatagctctgaggtcttaacttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatttttactaacatgtgctataatacacatcaaaagtatagctctgaggtcttaacttt 444

                                                                       
Query: 245 tagcaaaatataaatagctaccgtcttcataatttctttcacacagtgaaggtctttcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagcaaaatataaatagctaccgtcttcataatttctttcacacagtgaaggtctttcat 504

                                                                       
Query: 305 gtatcatcttgtttatttgaacagacaccatctaatcccactattttgtttgtttagact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtatcatcttgtttatttgaacagacaccatctaatcccactattttgtttgtttagact 564

                                                                       
Query: 365 tctgtgtattgactcttccatccttctgtaatgagtaaattagcataatttttaaaaaat 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 tctgtgtattgactcttccatccttctgtaatgagtaaattagcataattttaaaaaaat 624

                                                                       
Query: 425 cacaacatatcacatggttgaaccaaactcagaaactaaataattgctatctaaataaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacaacatatcacatggttgaaccaaactcagaaactaaataattgctatctaaataaag 684

                                                                       
Query: 485 cattgagtgaaaggaaacaataatatttttattcatagaaactagtttagaatgtgatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cattgagtgaaaggaaacaataatatttttattcatagaaactagtttagaatgtgatta 744

                                                                       
Query: 545 attcaatgttgcttcaaactgctaagtagccattaataaaatgtcagttaaacgaattaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attcaatgttgcttcaaactgctaagtagccattaataaaatgtcagttaaacgaattaa 804

                                                                   
Query: 605 ctcaatgttgtgaatgctacacttatgagttttgaatgttgcacatacctcagaag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctcaatgttgtgaatgctacacttatgagttttgaatgttgcacatacctcagaag 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_m21.g1 MSMg01no178_m21.g1 CHROMAT_FILE:
MSMg01no178_m21.g1 PHD_FILE: MSMg01no178_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:40 2005
         (280 letters)



>mm_chr12_43265948_43266627
          Length = 680

 Score =  487 bits (252), Expect = e-142
 Identities = 273/280 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgaagtgttttctgaattttcagaagggtttttatactatttcgatatagcttgcagg 60
           ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct: 480 cttgaagtgttttctgaattttcagaaggttttttatacaattttgatatagcttgcagg 421

                                                                       
Query: 61  ttttctaagggtcatttaggttgtagtgactgctcaatagttgtaagttttccaatacac 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttttctaagggccatttaggttgtagtgactgctcaatagttgtaagttttccaatacac 361

                                                                       
Query: 121 atatagagtatacttttcagtttatttatgtctttttaatctcagtaatttttgtagttt 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atatagactatacttttcagtttatttatgtctttttaatctcagtaatttttgtagttt 301

                                                                       
Query: 181 ttactgtggtatttcctcagtatttagtagtttttttatattcttggaaatacaaaattc 240
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 300 ttactgtggtatttcctcagtatttagtagtttttttacgttcttggaaatacaaaattc 241

                                                   
Query: 241 ttcataatttccctttcaaaaatgttcatggctaatagtt 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttcataatttccctttcaaaaatgttcatggctaatagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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