Query= MSMg01no178_p14.b1 MSMg01no178_p14.b1 CHROMAT_FILE:
MSMg01no178_p14.b1 PHD_FILE: MSMg01no178_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:52 2005
(572 letters)
>mm_chr12_93542050_93543021
Length = 972
Score = 973 bits (503), Expect = 0.0
Identities = 548/563 (97%)
Strand = Plus / Plus
Query: 7 gaattcttctttatccacatgtgggtaacatttctttccaccttcctgtgtcagtaatga 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttctttaaggacatgtgggtaacatttctttccaccttcctgtgtcagtaatga 266
Query: 67 aacacaattgtgtcaaaaacccaaatacaacaagagatgcttttactttacatgagaatc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aacacaattgtgtcaaaaacccaaatacaacaagagatgcttttactttacatgagaatc 326
Query: 127 tttttcacaaagagcatcacccttgacatctaacgtttttctgttagtatttatttgatc 186
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tttttcacaaagaccatcacccttgacatctaacgtttttctgttagtatttatttgatc 386
Query: 187 ttcacatattgctggctcatttatctgggccactgtgctttgtacttcaactgaattggt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttcacatattgctggctcatttatctgggccactgtgctttgtacttcaactgaattggt 446
Query: 247 tctgaaatctgaatgcgaggcttcttcagtatgcgtgccatgttgaaaagcaaaatgcac 306
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 447 tctgaaatctgaatgcgaggcttcttcagtatgtgtgccatgttgaaaagcaaaacgcat 506
Query: 307 ctcagagtgtttgtttcagtgcatcttaaatagagatgaaagtatttcacagggctgttg 366
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 507 ctcagagtgtttgtttcagtgcatcttaaatagagatgaaagtattttacagggctgttg 566
Query: 367 tgagacccacatacaagagataatggatccagtgaaactgtcagcttggtactgaacaaa 426
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgagagttatatacaagagataatggatccagtgaaactgtcagcttggtactgaacaaa 626
Query: 427 agctcactgtggctttagaccacacatgagaacacaatggctaagattccttctagtttt 486
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agttcactgtggctttagaccacacatgagaacacaatggctaagattccttctagtttt 686
Query: 487 ctgggtctgagagtctattggtaagttcctccttactcaaccatagacagacagacatcc 546
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctgggtctgagagtctattcgtgagttcctccttactcaaccatagacagacagacatcc 746
Query: 547 atcctggaaaaggagaaagctgc 569
|||||||||||||||||||||||
Sbjct: 747 atcctggaaaaggagaaagctgc 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_p14.g1 MSMg01no178_p14.g1 CHROMAT_FILE:
MSMg01no178_p14.g1 PHD_FILE: MSMg01no178_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:52 2005
(343 letters)
>mm_chr12_93615854_93616596
Length = 743
Score = 543 bits (281), Expect = e-159
Identities = 315/339 (92%), Gaps = 23/339 (6%)
Strand = Plus / Minus
Query: 1 tcttagtatgtccaaggccctgaatattatctccagtatagccaaaagaaatgtcccgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttagtatgtccaaggccctgaatattatctccagtatagccaaaagaaatgtcccgct 326
Query: 61 tgatgtacaagactctaaatccagcacttggaagaaagaagcaggaagactgcaaatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatgtacaagactctaaatccagcacttggaagaaagaagcaggaagactgcaaatttc 266
Query: 121 agagcatcctgtgctaaataacaagcttccgactcaacattagctcctttttttcccagt 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 agagcatcctgtgctaaataacaagcttccgtctcaacattagctcctttttttcccagt 206
Query: 181 ataagtttattatttatttatttattatagaattattttgctttctcagacacctcaatc 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ataagttta----ttatttatttattatagaattattttgctttctcagacacctcaatc 150
Query: 241 ctaagtgactgaaaaataggcttcccaaataagacatggaaacaaagatgtctttgatat 300
||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 149 ctaagtgactgaaaaataggcttcccaaataagacatggaa------at-------atat 103
Query: 301 atatatatatttttttatatgttacattaatattttagg 339
||||||||| ||||||||||||||||||||||||
Sbjct: 102 atatatata------tatatgttacattaatattttagg 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
