Query= MSMg01no179_d14.b1 MSMg01no179_d14.b1 CHROMAT_FILE:
MSMg01no179_d14.b1 PHD_FILE: MSMg01no179_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:11 2005
(248 letters)
>mm_chr12_90533540_90534186
Length = 647
Score = 449 bits (232), Expect = e-131
Identities = 244/248 (98%), Gaps = 1/248 (0%)
Strand = Plus / Minus
Query: 1 aggggtatcctttgagaaggattatggggtggtgggcatggccttgctgtagtgcatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aggggtatcctttgagaaggattatggggtggtgggcatggccttgctgtagtgcatatg 283
Query: 61 accttgttgagagaagtatgcccctagggatgccaggcttggagtaactttctccatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 accttgttgagagaagtatgcccctagggatgccaggcttggagtaactttctccatcac 223
Query: 121 caccctttctttttttctctctcctcagctacttcctgcaccatacctgccaccatgttc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 caccctttc-ttttttctctctcctcagctacttcctgcaccatacctgccaccatgttc 164
Query: 181 cctgccctgatgataatgatataagtctctgaaagtttaagcaaaatcccaattaaatgt 240
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 163 cctgccctgatgataatgaaataagtctctgaaactttaagcaaaatcccaattaaatgc 104
Query: 241 tttatttt 248
||||||||
Sbjct: 103 tttatttt 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 647
Length adjustment: 9
Effective length of query: 239
Effective length of database: 638
Effective search space: 152482
Effective search space used: 152482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no179_d14.g1 MSMg01no179_d14.g1 CHROMAT_FILE:
MSMg01no179_d14.g1 PHD_FILE: MSMg01no179_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:11 2005
(518 letters)
>mm_chr12_90449454_90450371
Length = 918
Score = 797 bits (412), Expect = 0.0
Identities = 491/526 (93%), Gaps = 17/526 (3%)
Strand = Plus / Plus
Query: 1 tgtgggtagaaaacaaagtttatttggagaatcaaactgtgaggttgcct--------ca 52
||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 202 tgtggatagaaaacaaagtttatttggagaatcaaactgtgaggttgcctcatgggaaca 261
Query: 53 gagcagcagctgtctgggaaagcaagcagaccttatatgatagtcagcagggtgaaggta 112
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 262 gagcagcagctgtctgggaaagcaagcagactttatatgatagtcagcagggtgaaggta 321
Query: 113 cttgaggtcatgcaggctgctcagactaatcatcaactagatgcccttgcccaagatagt 172
|| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 322 -tt-------tg-aggctgctcagactaatcatcagctagatgcccttgcccaagatagc 372
Query: 173 taactcttaaggacagataagggtggtagtggttttcctggtaaacagaaacctaccttg 232
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 373 taacccttaaggacagataagggtggtagtggctttcctggtaaacagaaacctaccttg 432
Query: 233 tgatatttctagggaatctgagtttaggcttcagtttagccaattacaatcctgattacc 292
||| ||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 433 tgacattcctaagcaatctgagtttaggcttcggtttagccaattacaatcctgattacc 492
Query: 293 cagtcatagtccttctctgtaggtcattgtcataagcactggtattttggggacctgctt 352
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 493 cagtcatagtccttctctgtaggtcattgtcataagcactggtgttttggggacctgctt 552
Query: 353 tggactaacaacggtggagacacaacaggtagaatctttggggtttgcatgccaaccagt 412
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 553 tggactaacaatggtggagacacaacaggtagaatctttggggttcacatgccaaccagt 612
Query: 413 ctaaccatactttgaattccacaataatcatgagagacagtgttttgctatggctccatc 472
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctaaccatactttgaactccactataatcatgagagacagtgttttgctatggctccatc 672
Query: 473 tgagcacagataagtttctggttattcaaggtcttttgatggaaat 518
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 673 tgagcacagataagtttcttgttattcaaggtcttttgatggaaat 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
