BAC Information

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BAC

Clone NameMSMg01-179H22
Chromosome12 (Build37)
Map Location 60,063,361 - 60,063,679
singlet/doubletsinglet
Overlap geneSec23a
Upstream geneSstr1, Clec14a, LOC100040183
Downstream geneSip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179H22.T7 (MSMg01no179_h22.b1)MSMg01-179H22.TJ (MSMg01no179_h22.g1)
ACCAG373264AG373265
length720720
length of high quality
(start - end)
322 (39 - 360)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no179_h22.b1 PHD_FILE: MSMg01no179_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:31 2005CHROMAT_FILE: MSMg01no179_h22.g1 PHD_FILE: MSMg01no179_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TGACTGCTGGGATTAAAGGTGTGCATACTATGCCCAGCTTATAATATTAT
TTTAAAATAGCCTATGATTATCAATTTTTCTATTTATTTTAATTGATTTT
GTATAATTAACAGGAATGAAGGAAATTTTCTAATATCCATTTTAATAAAA
ACTACATTGGAAAACTATATTGATAACCCAATCAATTGGCAACGAAATTT
TACTATGGCAAGTAAAAGTATTTCCCAGGAGTCTACATTTCTGAATTTTT
TCATTTTCTCCTGATTCACAAATTCCAGCATTAGTAAAATTTTTAAGTTT
AAAAACAGGATAATTATACAACCCAGCAGATTAGTAGCATATATGAGAAT
TCACAGATCCATGCCACTCTGGCATGCCACAGACATGCCAAAACATATTC
TGAATTAAGGAAAAATCATGAAACATGTTAATGCCTAAGGACGTGAAAGA
ACTGGCAAGGAAGGGGCAATGTGCTGGAACTGAGGAAATGGAGTCAGAAG
GCCTGGGTTCCTGGGTCTCTGTTGCTTCTCAGAGCCCACCGAGTCTGTGT
GTTTCTGCAGCTGCAGACTTCCCTATGCCCACCAGTGGTGTAAGGATGAC
CGAAGCAGCTCAAGGCAATGTACAGCAGTGTGTACACTCAGTATAGTACA
TGTTCCGCAACTCTGTTTGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGACCCAGTACCAGCTTCTGGTGGTAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACATATATATATATATATATATATATATATATATACACAGGCGCAAAA
CACTCACATAAGTAAAATAATAAAATTAATTAAAAAAAAAAGATTTCAGC
CAGGTGCAGTGGTGCATGCCTCTGATTCCCACACTCAGGAAGCAAAGGCA
GGCAGATCTCTGAGTTTGAGGCCACTCTGTGTGTGTGCACAGAGTGATTC
CAAGACAAGACTACACAGACAAACTCTGCCTGAAAAAAACAAAAAACAAA
AAAAGATTCCTTTCCTGCCACAAACATTTATCCAAAAAGATACAATATGT
AGACATCACTCAATGAAACCGATTTTGCTTACTTTATCTGCTAGAAGAAC
CAGACAATCAGAATGACAAAAATTATTGACAGTAGCTGCAGGCTGCTTAA
TATCGGTTGCTAATTCTAATTAATAAATAGAACGAATGGTTACACCAAGA
AAGGCCATACTAGAACTTACAGTGATTGATTTCCAAGTTCTAAACCTGAT
GGAACTTGATTTCGTGTATATAATAATGTAAACCATTAAATATAAAAGAC
CCTGCCTCCAGGAAATAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_h22.b1 MSMg01no179_h22.b1 CHROMAT_FILE:
MSMg01no179_h22.b1 PHD_FILE: MSMg01no179_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:31 2005
         (322 letters)



>mm_chr12_60063158_60063879
          Length = 722

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactgactgctgggattaaaggtgtgcatactatgcccagcttataatattatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactgactgctgggattaaaggtgtgcatactatgcccagcttataatattatt 263

                                                                       
Query: 64  ttaaaatagcctatgattatcaatttttctatttattttaattgattttgtataattaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaaaatagcctatgattatcaatttttctatttattttaattgattttgtataattaac 323

                                                                       
Query: 124 aggaatgaaggaaattttctaatatccattttaataaaaactacattggaaaactatatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 aggaatgaaggaaattttctaatatccattttaataaaaactacattagaaaactatatt 383

                                                                       
Query: 184 gataacccaatcaattggcaacgaaattttactatggcaagtaaaagtatttcccaggag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gataacccaatcaattggcaacgaaattttactatggcaagtaaaagtatttcccaggag 443

                                                                       
Query: 244 tctacatttctgaattttttcattttctcctgattcacaaattccagcattagtaaaatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctacatttctgaattttttcattttctcctgattcacaaattccagcattagtaaaatt 503

                              
Query: 304 tttaagtttaaaaacagga 322
           |||||||||||||||||||
Sbjct: 504 tttaagtttaaaaacagga 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)