BAC Information

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BAC

Clone NameMSMg01-179J15
Chromosome12 (Build37)
Map Location 54,912,112 - 55,070,143
singlet/doubletdoublet
Overlap geneNpas3
Upstream geneAkap6
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179J15.T7 (MSMg01no179_j15.b1)MSMg01-179J15.TJ (MSMg01no179_j15.g1)
ACCAG373335AG373336
length721768
length of high quality
(start - end)		685 (37 - 721)238 (67 - 304)
definitionCHROMAT_FILE: MSMg01no179_j15.b1 PHD_FILE: MSMg01no179_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:39 2005CHROMAT_FILE: MSMg01no179_j15.g1 PHD_FILE: MSMg01no179_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,912,112 - 54,912,370)(55,069,910 - 55,070,143)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTA
AACTATCCAGATCTTACCCTAGGCAGCTTTGGACATCTGTCAACAGAGAG
CTCAAGTCATCTGTTGTCACAAAAGGACCCATCACCTACACTTCCACATA
AGACCTGTGAGAGTTTTTTACCATTACTACCAGAGAACACTGACAAGTGT
TTGGAAAAGATGGGGAGACCTCTGAGAAAAGCAGCCCATTGCTCCTCAAG
ACAACCTTGGCTTGTTTACTTGAGGCTTAGTCAAAATGTAGCTTCTTTCA
GCAGCTTGAAAAACACCATTTGTAGACTGTCCCTTGTGACTGCTCTTAAG
GCAACTTAATCCTAAGTCTGTGATAATGTTATATATAATAACATTCCTGA
TAATTATATATATATGTATATATATATATGTACATGCAAGTACATATAAT
ATAAAATATATTATGTATAGTTAAATCTCATGGAGCTTAACCCACCCCAA
CTATTTGTGATTTTGCCCTTTTTTTTTAACCTGGTCTTCAGCTGTTGGCT
CTTCCAGGCACATCCTGAAGAAAGGCTGTAGTCAGGCCATCTCCTTTGCT
CTCAGATAAGAAGATGGGCACTGGAGAAACTCCTGGAAGTAAGGAGCTGA
GTTCCTCTCGGACTCTCAGCACAGGTCTTTGGGTGACTGGACCTGACTGG
AGGCAGAGGTCCCAGCCCAGC

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCCCCTCTGTTATTTGGAATATATGAGCTATG
CCTCTAAACCAGGCCATTAGCTGGGCCGTGGATAGGTTCATCGCCTCACC
CACGGGACTGCTCGGCGGGTGCTCCCAGCTCCCTTCCCTGCCTTCTACAT
TTAGAAAGCCCTCTTTGACTCAGTAGTAGGCTATGATTTAATAACCCTGT
TCTGCTGACTTCATAGGCTGTAGAACCTCAGGGGTGGAGGGGTGGGGTGG
NNNNNNNNTNNTTTTTTNTNTNNNNNNNNNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTCCCCCCCCCCCCCCCCTTTTTTTCTTCCCCCTTTCTCCC
TTTTTCCTTCCCCCCCCAACAAAAAAAATAAAATTCTTTTTTTTGTGTTT
TATCTTCCTTCTCTTTCTTTTTCCTTTCCTCTACTCTCTCTCTCTTTTTC
TTTCTTCTCTTTTTTTTTCAGTTTATATCGCCGTTTTTTTCTCCTTTATT
TTCTTTACTTTAATCACGTCATTTGTTCTTCTTTTATCGTTATTTATCTT
AAGCCGGTCTGGTGTACCACGTCTTATTTTCCCCTTTTTTTTTCTTTTTC
TTCTTTTCTCTTTCTTTTTATATCTCTTTAAATTTTCACTCTCTGCCCCT
TATCTAACTCCTGTCTATTTCTCGCACCACGCACTTCGGTGCTCCCTTCG
TGCTAATTCCCTCCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_j15.b1 MSMg01no179_j15.b1 CHROMAT_FILE:
MSMg01no179_j15.b1 PHD_FILE: MSMg01no179_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:39 2005
         (685 letters)



>mm_chr12_54911908_54912992
          Length = 1085

 Score =  462 bits (239), Expect = e-134
 Identities = 254/259 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaaactatccagatcttaccctaggcagctttggacatctgtcaacagagag 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaaacaattcagatcttaccctaggcagctttggacatctgtcaacagagag 264

                                                                       
Query: 65  ctcaagtcatctgttgtcacaaaaggacccatcacctacacttccacataagacctgtga 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcaagtcatctgttgtcacaaagggacccatcacctacacttccacataagacctgtga 324

                                                                       
Query: 125 gagttttttaccattactaccagagaacactgacaagtgtttggaaaagatggggagacc 184
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaattttttatcattactaccagagaacactgacaagtgtttggaaaagatggggagacc 384

                                                                       
Query: 185 tctgagaaaagcagcccattgctcctcaagacaaccttggcttgtttacttgaggcttag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgagaaaagcagcccattgctcctcaagacaaccttggcttgtttacttgaggcttag 444

                              
Query: 245 tcaaaatgtagcttctttc 263
           |||||||||||||||||||
Sbjct: 445 tcaaaatgtagcttctttc 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no179_j15.g1 MSMg01no179_j15.g1 CHROMAT_FILE:
MSMg01no179_j15.g1 PHD_FILE: MSMg01no179_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:39 2005
         (238 letters)



>mm_chr12_55069710_55070347
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcccctctgttatttggaatatatgagctatgcctctaaaccaggccattagctgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 434 tttcccctctgttatttggaatatatgagctatgcctctaaaccaggtcattagctgggc 375

                                                                       
Query: 61  cgtggataggttcatcgcctcacccacgggactgctcggcgggtgctcccagctcccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cgtggataggttcatcgcctcacccacgggactgctcggcgggtgctcccagctcccttc 315

                                                                       
Query: 121 cctgccttctacatttagaaagccctctttgactcagtagtaggctatgatttaataacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cctgccttctacatttagaaagccctctttgactcagtagtaggctatgatttaataacc 255

                                                                 
Query: 181 ctgttctgctgacttcataggctgtagaacctcaggggtggaggggtggggtgg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgttctgctgacttcataggctgtagaacctcaggggtggaggggtggggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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