Query= MSMg01no179_j24.b1 MSMg01no179_j24.b1 CHROMAT_FILE:
MSMg01no179_j24.b1 PHD_FILE: MSMg01no179_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:41 2005
(333 letters)
>mm_chr12_52396217_52396950
Length = 734
Score = 609 bits (315), Expect = e-179
Identities = 327/331 (98%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 4 ggaattccccccc-agcttattcctgtccatgctcaagattgctttagtatggggattca 62
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccccccccagcttattcctgtccatgctcaagattgctttagtatggggattca 263
Query: 63 aagataccacaacataaaatagagctcccaattctctatcgttttcctttataactaacc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagataccacaacataaaatagagctcccaattctctatcgttttcctttataactaacc 323
Query: 123 atcagttgacatagtacacgaatatctgtttacatgtttattttctatctccttccatta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcagttgacatagtacacgaatatctgtttacatgtttattttctatctccttccatta 383
Query: 183 gaatgtgggcaccatggaagtaggaactttattgcttatctccagagcttaggacagcat 242
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 gaatgtgggcaccatggaagtaggaactttattgcttatctccagaacttaggacagcat 443
Query: 243 ctagaacacaataattattgttggatgtatgaataaataatttttaaaacaagagccaag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctagaacacaataattattgttggatgtatgaataaataatttttaaaacaagagccaag 503
Query: 303 ctaggcatggtggtacatataatttgtccta 333
||||||||||||||||||| || ||||||||
Sbjct: 504 ctaggcatggtggtacatagaagttgtccta 534
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 734
Length adjustment: 9
Effective length of query: 324
Effective length of database: 725
Effective search space: 234900
Effective search space used: 234900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_j24.g1 MSMg01no179_j24.g1 CHROMAT_FILE:
MSMg01no179_j24.g1 PHD_FILE: MSMg01no179_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:41 2005
(294 letters)
>mm_chr12_52558341_52559032
Length = 692
Score = 460 bits (238), Expect = e-134
Identities = 277/294 (94%), Gaps = 11/294 (3%)
Strand = Plus / Minus
Query: 1 cagagatgaatctcaggccatcaggttgacaagtgcctgatgagctaacaaaatgtatct 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 652 cagagatgaatctcaggccatcaggttgagaagtgcctgatgagctaacaaaatgtatct 593
Query: 61 ggttgtgtgtccagttttttaatgagttactattgttctcctgagatatacaagtaaaaa 120
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 592 -gttgtgtgtccag-tttttaatgaattactattgttctcctgagatatacaagtaaaaa 535
Query: 121 gtggggaagaaaatatctgggtcaaaaaaaaataaaaaaataaaaaaatcagggaaaatg 180
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 534 ttggggaagaaaatatctgggtc--aaaaaaat-----aataaaaaaatcagggaaaatg 482
Query: 181 actatgacaggcatgtcaagatgatattacaatcagcttcatcttctggagagggctaga 240
|||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||
Sbjct: 481 actatgacaggcatgtcaagatgatattgcaat--gtttcattttctggagagggctaga 424
Query: 241 gctcacacaactgcctctggctacccatcacacaagatacaggcagcttgcttt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gctcacacaactgcctctggctacccatcacacaagatacaggcagcttgcttt 370
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 692
Length adjustment: 9
Effective length of query: 285
Effective length of database: 683
Effective search space: 194655
Effective search space used: 194655
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
