Query= MSMg01no179_m24.b1 MSMg01no179_m24.b1 CHROMAT_FILE:
MSMg01no179_m24.b1 PHD_FILE: MSMg01no179_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:55 2005
(543 letters)
>mm_chr12_26879059_26880001
Length = 943
Score = 930 bits (481), Expect = 0.0
Identities = 517/539 (95%), Gaps = 18/539 (3%)
Strand = Plus / Minus
Query: 5 gaattctgttttatcacttttacaataaaagtaaataaactaagttaaatttcttgttta 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaattctgttttaacaattttacaataaaagtaaataaactaagttaaatttcttgttta 547
Query: 65 caaagaaaaaagtgcattttcaaggtcatgagtttgtttttatacaaaataaatttgaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caaagaaaaaagtgcattttcaaggtcatgagtttgtttttatacaaaataaatttgaga 487
Query: 125 tttgcttatagaaaatcctcttcactgtgtattggtgccaagagtggttccttaacttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tttgcttatagaaaatcctcttcactgtgtattggtgccaagagtggttccttaacttca 427
Query: 185 ccaataaagaaaaatagtctctatttttcagaattatcactgatagatgattccattaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccaataaagaaaaatagtctctatttttcagaattatcactgatagatgattccattaag 367
Query: 245 atttttgcaaacatggtgtgaacaatgcacatgtattataataaataattgtgcagatct 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 366 atttttgcaaacatggtgtgaacaatgcacatgtagtataataaataattgtgcagatct 307
Query: 305 gacaggccagcagaaggcaccgcccaggcagcatctgcccagccctcctggggctgtgtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gacaggccagcagaaggcaccgcccaggcagcatctgcccagccctcctggggctgtgtc 247
Query: 365 tctagaaggtctcttcttcactggttgtgaagcacctggggtttgggatctctctcctta 424
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 246 tctagaaggtctcttcttcactggttgtgaagcacctgggg-------------tcctta 200
Query: 425 catacctcattccacctcctacagcctagttggtgatctaccccccccgcccctccagat 484
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 199 catacctcattccacctcctacagcctagttggtgatctaccccc----cccc-ccagat 145
Query: 485 tctctccagatgtgaagttctccatgggaactgcccacccgagttccaccagagtgtgc 543
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 144 tctctccagatgtgaagttctctatgggaactgcccacccgagttccaccagagtgtgc 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_m24.g1 MSMg01no179_m24.g1 CHROMAT_FILE:
MSMg01no179_m24.g1 PHD_FILE: MSMg01no179_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:55 2005
(598 letters)
>mm_chr12_26814348_26815345
Length = 998
Score = 1156 bits (598), Expect = 0.0
Identities = 598/598 (100%)
Strand = Plus / Plus
Query: 1 cagagagacagactggctttattcctttgagatttgttgttcatgtttcttcatcccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagagacagactggctttattcctttgagatttgttgttcatgtttcttcatcccata 260
Query: 61 agtgcctgccatttgctgggcctcctgctgactctggaaagacagaaatggaaatagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgcctgccatttgctgggcctcctgctgactctggaaagacagaaatggaaatagcct 320
Query: 121 cttcctgtcgccaagaagatgctgtctaggacaaattgggtgtataggcaaggatgcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcctgtcgccaagaagatgctgtctaggacaaattgggtgtataggcaaggatgcttt 380
Query: 181 actatggaagggatgatcagaggaaccagttccttggatggtcggcctagcaaagggcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actatggaagggatgatcagaggaaccagttccttggatggtcggcctagcaaagggcca 440
Query: 241 ttcattgtgggactcaggtttttagggaaggcatacagaaaataaatcatgaatgcattc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcattgtgggactcaggtttttagggaaggcatacagaaaataaatcatgaatgcattc 500
Query: 301 ttaacaaaagagaagaacgagtaagagaaaacagaagctctccattctgagaagcctggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaacaaaagagaagaacgagtaagagaaaacagaagctctccattctgagaagcctggc 560
Query: 361 ttcttgcgctctcagagcactgcctctccctataggccaactctcactagtatctgctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttgcgctctcagagcactgcctctccctataggccaactctcactagtatctgctca 620
Query: 421 gccttgcacttggacatcctatcttaggccttgttgaaaggcttgcacataccttggcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccttgcacttggacatcctatcttaggccttgttgaaaggcttgcacataccttggcat 680
Query: 481 cccttgggacagttctctggctgatgtagacgcctccttcccatctgctctttaacacat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccttgggacagttctctggctgatgtagacgcctccttcccatctgctctttaacacat 740
Query: 541 ttcccctctttcatttcaacttcactggatactcacctccttgaggcatttttccaag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcccctctttcatttcaacttcactggatactcacctccttgaggcatttttccaag 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
