Query= MSMg01no179_o11.b1 MSMg01no179_o11.b1 CHROMAT_FILE:
MSMg01no179_o11.b1 PHD_FILE: MSMg01no179_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:01 2005
(557 letters)
>mm_chr12_98002242_98003195
Length = 954
Score = 942 bits (487), Expect = 0.0
Identities = 526/547 (96%), Gaps = 15/547 (2%)
Strand = Plus / Plus
Query: 4 ggaattccagatgaacccagactagagaatgaatgagtgtgtcccatccaagtccaggag 63
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ggaattccagatgaactgagactagagaatgaatgagtgt--cccatccaagtccaggag 261
Query: 64 tgaaatgtttcttgtgtgtgacctttgattcttctgcagatcccttgccaaagacagcac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgaaatgtttcttgtgtgtgacctttgattcttctgcagatcccttgccaaagacagcac 321
Query: 124 tacagacaaggagcatatgtctgggaatagtcagcacaaacattgtgtatgacattcacc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tacagacaaggagcatatgtctgggaatagtcagcacaaacattgtgtatgacattcacc 381
Query: 184 ttaaaatttgaaaggcagagatcacattaagaatgtagagaaattatcaattcccccata 243
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 382 ttaaaatttgaaaggcagagatcacattaagaatgtagagaaatcatcaattcccccata 441
Query: 244 cacagttccccatgcacacaaaactcattaatcaggagttccagagccccctgatactct 303
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacagttccc-atgcacacaaaactcattaatcaggagttccagagccccctgatactct 500
Query: 304 ttgaagcctgcaagccctcattagcaataactgatgccccaaatgagagatttcttattg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaagcctgcaagccctcattagcaataactgatgccccaaatgagagatttcttattg 560
Query: 364 cattctccccaaggaataaaggaacatttctctaatctctcagctaacccatgttggttg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattctccccaaggaataaaggaacatttctctaatctctcagctaacccatgttggttg 620
Query: 424 catacaatcacctctctctctctctctctctctctctctctctctctctctctctctctc 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catacaatcacctctctctctctctctctctctctctctctctctctctctctctctcta 680
Query: 484 tctctctctctctctctctgtctatctctccctatgtctctctgtgtccctctctctgtc 543
||| ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctatctatct------------atctctccctatgtctctctgtgtccctctctctgtc 728
Query: 544 tctctct 550
|||||||
Sbjct: 729 tctctct 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 954
Length adjustment: 10
Effective length of query: 547
Effective length of database: 944
Effective search space: 516368
Effective search space used: 516368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_o11.g1 MSMg01no179_o11.g1 CHROMAT_FILE:
MSMg01no179_o11.g1 PHD_FILE: MSMg01no179_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:01 2005
(632 letters)
>mm_chr12_98172221_98173252
Length = 1032
Score = 1176 bits (608), Expect = 0.0
Identities = 626/632 (99%), Gaps = 2/632 (0%)
Strand = Plus / Minus
Query: 1 tctaagagtctctcagaacattacagcctatttctagtggccttggttgccacccagatg 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tctatgagtctctcagaacattacagcctatttctagtggccttggttgccacccagatg 838
Query: 61 tgaaagttcagaacctgatatgaaagttcaaaatgaaaattctcttaattagtgatatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tgaaagttcagaacctgatatgaaagttcaaaatgaaaattctcttaattagtgatatta 778
Query: 121 ggtccattgctaataaaagcacacaaatcccagagacaatctggacccaaaacatttgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ggtccattgctaataaaagcacacaaatcccagagacaatctggacccaaaacatttgca 718
Query: 181 ctgaatctaataagatgccccatgttgctaaatctttaaattctagctactgcacaacat 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ctgaatctaagaagatgccccatgttgctaaatctttaaattctagctactgcacaacat 658
Query: 241 tgtagctgacattaaattacagtatccattgttttctaaatattgtagcaaataaagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgtagctgacattaaattacagtatccattgttttctaaatattgtagcaaataaagaat 598
Query: 301 tacctctttcaactattcccctatgtgttgatattggcttagagaaaacctagttaatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tacctctttcaactattcccctatgtgttgatattggcttagagaaaacctagttaatga 538
Query: 361 gtattttgtggat-ttaatatcttgtcaatctaaagtcctttttatttttcaaattctca 419
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 537 gtattttgtggatctt-atatcttgtcaatccaaagtcctttttatttttcaaattctca 479
Query: 420 ttttctcttttgtcctcaaactcattattttattctttatattcccagggctgcatttga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttttctcttttgtcctcaaactcattattttattctttatattcccagggctgcatttga 419
Query: 480 catctattaacctatgtccctgcgcaagaacactttttggacattgagtgtaactgacag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 catctattaacctatgtccctgcgcaagaacactttttggacattgagtgtaactgacag 359
Query: 540 gaggggttattggcttctacttgatatcaaatgcagatttaaattttttcaattatttct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gaggggttattggcttctacttgatatcaaatgcagatttaaattttttcaattatttct 299
Query: 600 tttctgcagacttaatccacccttccatattt 631
|||||||||||||||||||| |||||||||||
Sbjct: 298 tttctgcagacttaatccacacttccatattt 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
