Query= MSMg01no180_c10.b1 MSMg01no180_c10.b1 CHROMAT_FILE:
MSMg01no180_c10.b1 PHD_FILE: MSMg01no180_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:20 2005
(475 letters)
>mm_chr12_80512633_80513506
Length = 874
Score = 833 bits (431), Expect = 0.0
Identities = 460/471 (97%), Gaps = 4/471 (0%)
Strand = Plus / Plus
Query: 5 gaattcattatctttgcgggctatatctgcccgaggtattaagttgtaagtactttgaaa 64
|||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 208 gaattcattatctttgtgggctttatctgctcgaggtattaagttgtaagtactttgaaa 267
Query: 65 actgattgattttaattttttttttttttagtgctttgcacaaattaattcttaagtctt 124
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 268 actgattgattttaatattttttttt---agtgctttgcacaaattaattcttaagtctt 324
Query: 125 ttttgaaccaagatatctaaagccattctttcttatgctggtatttagtaatttatcaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttgaaccaagatatctaaagccattctttcttatgctggtatttagtaatttatcaat 384
Query: 185 acttttggtgtttgtatatatgcggtacacgagtgtgtatgttatctctgtgtgtgatca 244
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 acttttggtgtttgtatgtatgcggtacacgagtgtgcatgttatctctgtgtgtgatca 444
Query: 245 cgtgtgtagatgtgtatgcacatgtgtgcttgtgtgtgtataggcctgaggttaacgtca 304
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 cgtgtgtagatgtgtatgcacatgtgtgcttgtgtgtgtgtaggcctgaggttaacgtca 504
Query: 305 gcatccttcaggattgctgcctacacaaatgatcgttctttgactgttgactgcttgcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcatccttcaggattgctgcctacacaaatgatcgttctttgactgttgactgcttgcag 564
Query: 365 gtgctctcagactcttccattgttgctggcccatttctgcttctctttcctactagctcg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgctctcagactcttccattgttgctggcccatttctgcttctctttcctactagctcg 624
Query: 425 ggtgtctgccatttttttttaagtttagatttatgggctaggctttgtcag 475
||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 ggtgtctgccatttttttt-aagtttagatttatgggctaggctttgtcag 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 874
Length adjustment: 10
Effective length of query: 465
Effective length of database: 864
Effective search space: 401760
Effective search space used: 401760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_c10.g1 MSMg01no180_c10.g1 CHROMAT_FILE:
MSMg01no180_c10.g1 PHD_FILE: MSMg01no180_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:20 2005
(422 letters)
>mm_chr12_80675381_80676202
Length = 822
Score = 781 bits (404), Expect = 0.0
Identities = 419/426 (98%), Gaps = 4/426 (0%)
Strand = Plus / Minus
Query: 1 ctctgctgctgtcatgcggttaattctccacatttcctactatcctgatgatt----aaa 56
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 709 ctctactgctgtcatgcggttaattctccacatttcctactatcctgatgattaaaaaaa 650
Query: 57 aaaaaaaaaaaaaaaaaaggaaaagaagcctgctaatataaacatcaaagggcactccta 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aaaaaaaaaaaaaaaaaaggaaaagaagcctgctaatataaacatcaaagggcactccta 590
Query: 117 cttatgtagccttcagatactctccagagatggagtgtgggggcagaagatttaggggct 176
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 589 cttatgtagccttcagatactctccagagatggagtgtgggaacagaagatttaggggct 530
Query: 177 ttgtggaaaggatgttttcctctggagacaatggaccaagtctaccagacaatgctgcac 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttgtggaaaggatgttttcctctggagacaatggaccaagtctaccagacaatgctgcac 470
Query: 237 tgcatttggtggtatacagttaagcacaaagggtttgcccggagaggccaaagatgcccc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgcatttggtggtatacagttaagcacaaagggtttgcccggagaggccaaagatgcccc 410
Query: 297 ttggcttaatggagacatatcacagcttttattgagcagcaatgtggaagatgggagcgg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttggcttaatggagacatatcacagcttttattgagcagcaatgtggaagatgggagcgg 350
Query: 357 taccctccctaaatggagtctagttgcagacatcctccgtggggcctcagaaggaggggt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 taccctccctaaatggagtctagttgcagacatcctccgtggggcctcagaaggaggggt 290
Query: 417 gggttg 422
||||||
Sbjct: 289 gggttg 284
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
