Query= MSMg01no180_e09.b1 MSMg01no180_e09.b1 CHROMAT_FILE:
MSMg01no180_e09.b1 PHD_FILE: MSMg01no180_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:28 2005
(290 letters)
>mm_chr12_107110228_107110917
Length = 690
Score = 553 bits (286), Expect = e-162
Identities = 289/290 (99%)
Strand = Plus / Minus
Query: 1 cgtgttccttgggtttgcttacgtaccatgggaggggggtcactgacaggaagtggatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cgtgttccttgggtttgcttacgtaccatgggaggggggtcactgacaggaagtggatga 540
Query: 61 cccaaatgccgctgcactgcaaagtctttaaccagcatggatgatggcttcctagcagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cccaaatgccgctgcactgcaaagtctttaaccagcatggatgatggcttcctagcagaa 480
Query: 121 gagattgagtcccccctttcaattaacttcccttagcacctctccagagacccaaggcca 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 479 gagattgagtcccccctttcaattaacttcccttagcacctctcccgagacccaaggcca 420
Query: 181 catgcaattagggtagaattgcatacagatggctgagaggagcgggcagtttctcaggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 catgcaattagggtagaattgcatacagatggctgagaggagcgggcagtttctcaggtg 360
Query: 241 agcgtccaatgaccctcccccaagccctcctcctatgagcgatgtcaaca 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agcgtccaatgaccctcccccaagccctcctcctatgagcgatgtcaaca 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no180_e09.g1 MSMg01no180_e09.g1 CHROMAT_FILE:
MSMg01no180_e09.g1 PHD_FILE: MSMg01no180_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:28 2005
(290 letters)
>mm_chr12_107028659_107029347
Length = 689
Score = 518 bits (268), Expect = e-151
Identities = 286/294 (97%), Gaps = 6/294 (2%)
Strand = Plus / Plus
Query: 1 tttgacctgtgtgtcctgttgattaaatttaggtgatcaggccttggcgcgcaggtttct 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tttgacctgtgtgtcctgttgattaaatttaggtgatcaggccttggcga-caggtttct 259
Query: 61 ttacttattgaactattttgccagtctgatgcttgataattttgaaggtactgatttgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttacttattgaactattttgccagtctgatgcttgataattttgaaggtactgatttgta 319
Query: 121 ggttgatacatagtgagctctggattccatattggaattctcatcctagtattccatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggttgatacatagtgagctctggattccatattggaattctcatcctagtattccatatt 379
Query: 181 gtgttgggaaccatgtttgatttcctagggttttttttt----aagatgattttatttat 236
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 gtgttgggaaccatgtttgatttcctagggtttttttttttttaagatgattttatttat 439
Query: 237 atgaatatactgcattctgtctaaaggacacaccagaagaaggcattggatccc 290
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgaatatactgcag-ctgtctaaaggacacaccagaagaaggcattggatccc 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space: 191080
Effective search space used: 191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
