Query= MSMg01no180_i04.b1 MSMg01no180_i04.b1 CHROMAT_FILE:
MSMg01no180_i04.b1 PHD_FILE: MSMg01no180_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:46 2005
(643 letters)
>mm_chr12_87815145_87816188
Length = 1044
Score = 1067 bits (552), Expect = 0.0
Identities = 561/564 (99%), Gaps = 1/564 (0%)
Strand = Plus / Plus
Query: 81 tctgtaggctctgagcacagcagaggccccgactctgctatcccttccagtttgaaattt 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tctgtaggctctgagcacagcagaggccccgactctgctatcccttccagtttgaaattt 340
Query: 141 ctgtctgttccttcctttaaggaaggaagtttacagaaaccagcacgtgatgacagactt 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctgtctgttccttcctttaaggaaggaagtttacagaaaccagcacgtgatgacagactt 400
Query: 201 tgggagaccacccctggtggttcatcctctgggcttggctgcagatgaagaa-gaggggt 259
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 401 tgggagaccacccctggtggttcatcctctgggcttggctgcagatgaagaaagaggggt 460
Query: 260 ggctcgcctggactagcgactagtgactagcctgccttcaacttttgtaaatcaagtagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggctcgcctggactagcgactagtgactagcctgccttcaacttttgtaaatcaagtagt 520
Query: 320 tgctgggacccagacactagcattgacttactgtccccaacacgtgactgagttgaaaca 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgctgggacccagacactagcattgacttactgtccccaacacgtgactgagttgaaaca 580
Query: 380 gctgtctgttggacccccaaagcctagacctttattttactaaccaccccttctagagag 439
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gctgtctgttggaccccaaaagcctagacctttattttactaaccaccccttctagagag 640
Query: 440 caaggcacggtctgtcccccagcttctgccctttcaaatcaactccagcggtgtaagtgg 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 caaggcacggtctgtcccccagcttctgccctttcaaatcaactccagcggtgtaagtgg 700
Query: 500 aatgtcagagctgggagctgttaggagcatagcccagaacagatgagctcagagataatc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aatgtcagagctgggagctgttaggagcatagcccagaacagatgagctcagagataatc 760
Query: 560 aaaggcaccttactgctgacagaccagtggctccaggcagagggaagacgggggtctgat 619
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 761 aaaggcaccttactgctgacagaccagtggctccaggcagagggaagatgggggtctgat 820
Query: 620 tgaatttgctagcatatctaaagg 643
||||||||||||||||||||||||
Sbjct: 821 tgaatttgctagcatatctaaagg 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_i04.g1 MSMg01no180_i04.g1 CHROMAT_FILE:
MSMg01no180_i04.g1 PHD_FILE: MSMg01no180_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:46 2005
(289 letters)
>mm_chr12_87947839_87948527
Length = 689
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%)
Strand = Plus / Minus
Query: 1 tggacctccagaatcacccaaaccaattctcatgactggtctccccacagacctctgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tggacctccagaatcacccaaaccaattctcatgactggtctccccacagacctctgtct 374
Query: 61 cctgtctgtggatcatacaactaagcccaatttgcaaagtaaatacaaaaaagcaccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cctgtctgtggatcatacaactaagcccaatttgcaaagtaaatacaaaaaagcaccaaa 314
Query: 121 gcaagagaagtcagcattaagctctaatggactagacggcgttctgcagaaagcaagtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcaagagaagtcagcattaagctctaatggactagacggcgttctgcagaaagcaagtct 254
Query: 181 ccaccacaaacatggctgttactgggaggagtatgctaacaactttcctctccagagaaa 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ccaccacaaacatggctgttcctgggaggagtatgctaacaactttcctctccagagaaa 194
Query: 241 cagagagagagagagagagagagagagagagagagagagagagagagag 289
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 caaagagagagagagagagagagagagagagagagagagagagagagag 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 40
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
