Query= MSMg01no180_j12.b1 MSMg01no180_j12.b1 CHROMAT_FILE:
MSMg01no180_j12.b1 PHD_FILE: MSMg01no180_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:52 2005
(682 letters)
>mm_chr12_55387438_55388518
Length = 1081
Score = 1220 bits (631), Expect = 0.0
Identities = 667/679 (98%), Gaps = 1/679 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctagatacaatctccctgccagctggcccaagatttgttccaatgaggatgac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ggaattcctagatacaatctccctgccagctggcccaagatttgttccaatgaggatgac 822
Query: 64 actatagtacaacgctgaatcagtgacagtccctttgttccgtctcccagactcctgcgt 123
||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 821 actatagcacaaggctgaatcagtgacagtccctttgttctgtctcccagactcctgcgt 762
Query: 124 gccggtgtacagacatgtccagcttggcaggcagctgacatctgaaggattcaggttgtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gccggtgtacagacatgtccagcttggcaggcagctgacatctgaaggattcaggttgtt 702
Query: 184 atcagacggacactcactaaacagtgtccctcccggcctctgcggggcatgcagcagtgc 243
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 701 atcagacggacactcactaaacagtatccctcccggcctctgcggggcatgcagccgtgc 642
Query: 244 acgtaggcctgcatacctcctatctctgcccaggcaattacatgccagccaccctgcccg 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 acgtaggcctgcatacctcctatctctgcccaggcaattacatgccagccaccctgcccc 582
Query: 304 attccaagacagctggagccagctggggcacagtgcgcggccagggacaggagccaagca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 attccaagacagctggagccagctggggcacagtgcgcggccagggacaggagccaagca 522
Query: 364 gcttttttctctctccatcctttttgatgccacgatgattttcttctaagcaaaggcctg 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 g-ttttttctctctccatcctttttgatgccacgatgattttcttctaagcaaaggcctg 463
Query: 424 gacagcagtggtcaatgtggagaaaccaagctgcaagaacttgagattaagctgtgcctg 483
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 462 gacagcagtggtcaatgtggagaaaccaagctgcaagaacttgagactaagctgtgcctg 403
Query: 484 cgctgtaagggagctaatgggctcaggacagaggaccaggaagcagctccctcccttcct 543
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 402 cgctgtaagggagctaatgggctcaggacagaggaccaggaagcagcttcctcccttcct 343
Query: 544 ctcctggtctcagactgccccgagaattaggctcagatctgggttcaaacactgctgtgg 603
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 342 ctcctggtctcagactgccccgagaattaggctcagatctgggtttaaacactgctgtgg 283
Query: 604 gaatcagagtctgcatgaggaaggtatatgtgttggcccgggtccttgcccagggtccag 663
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gactcagagtctgcatgagaaaggtatatgtgttggcccgggtccttgcccagggtccag 223
Query: 664 gtttgcaacacacctgtgc 682
|||||||||||||||||||
Sbjct: 222 gtttgcaacacacctgtgc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1081
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1071
Effective search space: 719712
Effective search space used: 719712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_j12.g1 MSMg01no180_j12.g1 CHROMAT_FILE:
MSMg01no180_j12.g1 PHD_FILE: MSMg01no180_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:52 2005
(335 letters)
>mm_chr12_55320062_55320796
Length = 735
Score = 571 bits (295), Expect = e-167
Identities = 325/335 (97%)
Strand = Plus / Plus
Query: 1 tattcccagcccccacgggaaaagctaggcataccacacaaaacggcaatgtcagcgttt 60
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 201 tattcccagcccccatgggaaaagctaggcataccacacaaaacggtaatgtcagcattt 260
Query: 61 gtggaggttggaacttggaactacacataaggccaggcatggtggttgatctatggttag 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggaggctggaacttggaactacacataaggccaggcatggtggttgatctatggttag 320
Query: 121 cccaatacttgtgtcacaggaccaaaaacaacgtggaggaaaaaaaggatttatttcagc 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaatacttgtgtcgcaggaccaaaaacaacgtggaggaaaaaaaggatttatttcagc 380
Query: 181 ttacagtctatagtccatcagaaagtcagggccagaactcagggcaggaacctagaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacagtctatagtccatcagaaagtcagggccagaactcagggcaggaacctagaggca 440
Query: 241 ggagctgatgcagagactgcggaggagtggtgtttactggcttgcttctctcaaccagga 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagctgatgcagagactgcgaaggagtggtgtttactggcttgcttctctcaaccagga 500
Query: 301 gcgccttcccatgggggcagtatttgatgtgttta 335
| ||||||| ||||||||||| ||||||||||||
Sbjct: 501 gtgccttcctatgggggcagtgcttgatgtgttta 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space: 236676
Effective search space used: 236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
