BAC Information

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BAC

Clone NameMSMg01-181H08
Chromosome12 (Build37)
Map Location 89,099,813 - 89,100,104
singlet/doubletsinglet
Overlap geneLOC100038982
Upstream geneEG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992
Downstream geneLOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181H08.T7 (MSMg01no181_h08.b1)MSMg01-181H08.TJ (MSMg01no181_h08.g1)
ACCAG374631AG374632
length765738
length of high quality
(start - end)
196 (83 - 278)293 (70 - 362)
definitionCHROMAT_FILE: MSMg01no181_h08.b1 PHD_FILE: MSMg01no181_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:55 2005CHROMAT_FILE: MSMg01no181_h08.g1 PHD_FILE: MSMg01no181_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGGTTGGAGGATCA
GGTCACTTCTTGAGCCAAGAAGTTTTAAGCTAGCCTGAGCAACATATCTA
GGCTGCATGGGGTGCTGGAGGATCTCAACACTCCCTACAGCCAATTTCTG
GTAGCTAAGTGTGTATACACTTGATATGTTTTGATCTTGATTCAGACTTT
TAGGCGAATGGAATATTTTCTTGATTTTGTGACAAATTTGTTATGTATCC
CTGGCTGACCTGAAATTCACCATGTTTGCACTCTGTACCACATGAATGCC
TGCAGGCTGTGATGTCTACATTAGCCCTACAATTTGTATTTGTGACCCCT
CACGTGGCTGTTTGCCCCCCCTTTATGCCCCTATTAATACCCGATTTTTT
TTTCGCCCCCCCTTTTATTGTCTCCTATGTACTGCCATTAACCTTTGTTT
TTCACTCTACACCACCTTCCTTTTTTTCCCTTTTTCCACCCGTTTTTTTC
CCCCCCCCCCCCTTTTTTTTTTCCCCCCCTTTTTCCCCCCCCCCCCCCTC
ACCCCCCTTCTCTTTTTTTTCCTCCTCCCCCCCTCCCCCCCCTTTTTTTT
TTTCTCATTACCCCATCCTCCCCCTCTCTTCTTTTTTTCATTATTTATTC
TCCCCCCCCCCCCCCACCCCCCTTTAAGACATCTTTTATTATACTCCATC
CCCTCCTTTTAACTT
TCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTGTTCCCAAACATGGCCTCTCAAGATACTGGTGTTCCCATGG
AGAGTAAAACCAAAAAGAAGAACCCTGGTACTCCAGCCAGCCTCTGCCAC
AAGGGCAGGGTCCTGAAGGAAAGAAAAAAGAAAGAAAGAGGAAGACCCAG
CCAGGCCCAGAGGGAAGGAAAAGGTTTGTGCAGACAAGAAACTGCCTGCT
AGTAGCCCCAGGGGCAAGGCCCAGGGGCCTAAAGGAACCAAGAAAAAGTC
ATCCTCTGTGACCACAGTGGCCAGCCCAGGGAAAGGGGGGATGGGCTGCA
CTTCCAACACAGGTTCCTCTTGACTCTAGGCATGGTCCTGGTGCACCACT
GACCTGGAAAGTTGGCACCCCCACGAAGATGCCTTCGGGCAAGTTGGTGG
AACAGAAGGCCCGCTCCCTGAATGAAGGAGCCCCCCAGGACACTCCTAAG
CTCAAAAAACGGAACCTGAGACACACAGAGCTATTTGGGGCTGAAAGCAA
GGAGGAGGACTCAGGACTGGGAGCGTTATGTCCCCAGGTCTGGTCCCCGA
TCCTGTCCCAAATGAGCTCTTACTCTTAATCAGACTCTCACTCCAGACTG
TTAATGTAACAACACGAAGTTTTCTTTTTGTCCATATGGCCTCGCCATTT
GTTGTTCCTGTAACGCCCATCCCTTTTGTCCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_h08.g1 MSMg01no181_h08.g1 CHROMAT_FILE:
MSMg01no181_h08.g1 PHD_FILE: MSMg01no181_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:55 2005
         (293 letters)



>mm_chr12_89099613_89100304
          Length = 692

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%), Gaps = 1/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcctctcaagatactggtgttcccatggagagtaaaaccaaaaagaagaaccctggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 201 atggcctctcaagatactggtgttcccatggagagtaaaaccaaaaagaagaaaactggt 260

                                                                       
Query: 61  actccagccagcctctgccacaagggcagggtcctgaaggaaagaaaaaagaaagaaaga 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 actccagccagcctctgccacaagggcagggtcc-gaaggaaagaaaaaagaaagaaaga 319

                                                                       
Query: 121 ggaagacccagccaggcccagagggaaggaaaaggtttgtgcagacaagaaactgcctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaagacccagccaggcccagagggaaggaaaaggtttgtgcagacaagaaactgcctgc 379

                                                                       
Query: 181 tagtagccccaggggcaaggcccaggggcctaaaggaaccaagaaaaagtcatcctctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagtagccccaggggcaaggcccaggggcctaaaggaaccaagaaaaagtcatcctctgt 439

                                                                
Query: 241 gaccacagtggccagcccagggaaaggggggatgggctgcacttccaacacag 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaccacagtggccagcccagggaaaggggggatgggctgcacttccaacacag 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space:   193972
Effective search space used:   193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)