BAC Information

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BAC

Clone NameMSMg01-182P14
Chromosome12 (Build37)
Map Location 120,399,430 - 120,512,093
singlet/doubletdoublet
Overlap geneItgb8, EG627557
Upstream geneDnahc11, Sp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5
Downstream geneLOC100043011, 4732474O15Rik, LOC668632, LOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182P14.T7 (MSMg01no182_p14.b1)MSMg01-182P14.TJ (MSMg01no182_p14.g1)
ACCAG375707AG375708
length709706
length of high quality
(start - end)		288 (78 - 365)312 (46 - 357)
definitionCHROMAT_FILE: MSMg01no182_p14.b1 PHD_FILE: MSMg01no182_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:52 2005CHROMAT_FILE: MSMg01no182_p14.g1 PHD_FILE: MSMg01no182_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,399,430 - 120,399,717)(120,511,785 - 120,512,093)
sequence
TCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGCAAGGAAATTCATCTTTCC
CATGGCAACAGCCTTGGTCAGTCTCAAAATTAGTGCAAACTAGTGAGGGC
CTAAAAATGTACAAATCATTTTTTTTCAAGGCTTCTCTTCGATTATGCTC
TTTTGCTCATTTCATGTGGAAATCATTGTTCATAAACACTGCTCACTTTT
GAGTTGCTAGCATTTAATTAATGGATATCTTCCTTTGGGGGGAGGGACTG
CCAAGCATCCATTAATATGTATATTTATAAAAGGACCCTATTCTGAGCAG
CAAAGTAGGATTTTCTCATCAGCTTCACCGAGCACAGTTTCTTTAGGTGC
AGTCACAGTATTTTGACCCCCCCCATCTCAACTTGAGTAAACACTCAAGT
CAAGAGCATTGTCATAGCTCTGCTAATGGACACATCATGTTTTCTGACTA
GAGAATAATTTACAGGCGTTCCAGCCCCCAGAGTATAATACCTAATAGAG
GCTAGTGCCCATCGACATGCTAACATCTAATAACTTTCAAGTGCTGGAGA
GTAGCAAACTGAGGATAGAACTTCTTTACATTCCTCTGCTTTCACAGGCA
AGACACTTTCTACTTTCATTTCCGCCCAGAATTTATTATCCCCCTCCCGA
GCCTCTGTG

TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCATAAACTGACCATATAGGTAAGCTAGGAAAATCCAGTACAAAT
CCAGGCAAAATAAAAAGAAAAGGATCCTGTCTGGGCTGTGAAAATAAATA
AAATCATCTCTATTTGGATGGTCTTGCTGCTTTAGTTTTTAAATTTTGGT
GTTTGCTTTGTTGTTGTTGTTAGTCTGTATGTTTTCAGACTAAGTTTACT
TAACTTTAGGCAATCTCATGAAATATACCCAATCTTTGAAGCATGGCAAT
ACAAATTACTACTAAAAAGACCAAATGGTCAAACAAAACAAACCACTTTA
AAGGAATTTTATCTAACCCCCACCCCACGCTTTAAAGATTGCTTTTGGGA
AGAAGTATTTCTACCCACAAAAAAAGATTTGTTGCTTAACCAGTCAAAGA
AAAGCAGACACAGCTTCACTGCTTGTAACTGAAACTTGAAACCTAGATAT
ATTTTCTGTTTACTGTTTTCTGGCCTTTACCTCCTTAAATACCCTCTGAT
CAAACTACTCACCAATTTGAATTTATGTCTTCTAGTTTAATCGCAGATAT
ATTCTCATTTCTTGTTTTTCTATATGAACATAATATATTTGCCTTGTAAT
CCATGTCCACTCACACCACTGAAGATAATCCATAGTCATATTTTTTCTTA
CTAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_p14.b1 MSMg01no182_p14.b1 CHROMAT_FILE:
MSMg01no182_p14.b1 PHD_FILE: MSMg01no182_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:52 2005
         (288 letters)



>mm_chr12_120399230_120399917
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggcaaggaaattcatctttcccatggcaacagccttggtcagtctcaaaattagtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ttggcaaggaaattcatctttcccatggcaacagccttggtcagtcttaaaattagtgca 260

                                                                       
Query: 61  aactagtgagggcctaaaaatgtacaaatcattttttttcaaggcttctcttcgattatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 aactagtgagggcctaaaaatgtacaaatcattttttttcaaggcttctctttgattatg 320

                                                                       
Query: 121 ctcttttgctcatttcatgtggaaatcattgttcataaacactgctcacttttgagttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttttgctcatttcatgtggaaatcattgttcataaacactgctcacttttgagttgc 380

                                                                       
Query: 181 tagcatttaattaatggatatcttcctttggggggagggactgccaagcatccattaata 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 tagcatttaattaatggatatcttcctttgggaggagggactgccaagcatccattaata 440

                                                           
Query: 241 tgtatatttataaaaggaccctattctgagcagcaaagtaggattttc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtatatttataaaaggaccctattctgagcagcaaagtaggattttc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no182_p14.g1 MSMg01no182_p14.g1 CHROMAT_FILE:
MSMg01no182_p14.g1 PHD_FILE: MSMg01no182_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:52 2005
         (312 letters)



>mm_chr12_120511582_120512293
          Length = 712

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccataaactgaccatataggtaagctaggaaaatccagtacaaatccaggcaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggaattcccataaactgaccatataggtaagctaggaaaatccagtacaaatccaggcaa 453

                                                                       
Query: 64  aataaaaagaaaaggatcctgtctgggctgtgaaaataaataaaatcatctctatttgga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aataaaaagaaaaggatcctgtctgggctgtgaaaataaataaaatcatctctatttgga 393

                                                                       
Query: 124 tggtcttgctgctttagtttttaaattttggtgtttgctttgttgttgttgttagtctgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tggtcttgctgctttagtttttaaattttggtgtttgctttgttgttgttgttagtctgt 333

                                                                       
Query: 184 atgttttcagactaagtttacttaactttaggcaatctcatgaaatatacccaatctttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atgttttcagactaagtttacttaactttaggcaatctcatgaaatatacccaatctttg 273

                                                                       
Query: 244 aagcatggcaatacaaattactactaaaaagaccaaatggtcaaacaaaacaaaccactt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aagcatggcaatacaaattactactaaaaagaccaaatggtcaaacaaaacaaaccactt 213

                    
Query: 304 taaaggaat 312
           |||||||||
Sbjct: 212 taaaggaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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