BAC Information

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BAC

Clone NameMSMg01-183C06
Chromosome12 (Build37)
Map Location 55,063,124 - 55,218,549
singlet/doubletdoublet
Overlap geneNpas3
Upstream geneAkap6
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183C06.T7 (MSMg01no183_c06.b1)MSMg01-183C06.TJ (MSMg01no183_c06.g1)
ACCAG375822AG375823
length711725
length of high quality
(start - end)		653 (49 - 701)295 (72 - 366)
definitionCHROMAT_FILE: MSMg01no183_c06.b1 PHD_FILE: MSMg01no183_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:04 2005CHROMAT_FILE: MSMg01no183_c06.g1 PHD_FILE: MSMg01no183_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,217,900 - 55,218,549)(55,063,124 - 55,063,418)
sequence
NATCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCTAGGGACTGTGCAGCACAGTTGGATTGTCTTCAGGACTT
GCTTTTCCTCCTGATGCTTGGTTAACTACAATACAAACATTGAGAAGTTC
AGCCCTAGCCACCGTAGTCCCAAGCTGATGCCCTACTGGCTACCCACACC
AGAAGAAGCAATGGCTGTGTTGTCTCATAAGGTGAGCCATGTTAGATCTC
TCTCATCTCCAAGCCCAGGTCATGGAAATTAGTCATGCTGGTGCCTGGGT
GATCTTTCAGCACCAGCTCTGGGGGACAACAGAGCCTGACTGCTTTGGGT
GGCCCCAAGGAAAGTACCTAAGTTGGACACCTATGTGGGGACTGCCAGCT
TATATGACTTAGTAAGAGTGTAGAGAAGATAGAGGCCAATATATAGGTGA
ATGCCAGGGGAGGAGGAGAGGAAAGAGTCTTACTTTGAATTAATTCTTTG
AACTTGTGTCCTCTGGTCAAGTTACTGGTTGGCATCATCTCTTGTGTTTC
CACAGGGACTTCCCCAGGCAGAGTAGGCAGTGTTGGTTTATAGTGACTTA
CAGCCATATAGTTGACCCAGTCCCAGCTTACTCTCATCCTGTATACATTT
TAAAGACTTTGGTAGTTATAACATAGAGAGAATTTAACACTAATAGTTAA
GAAAGCTTGAN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCCAGGGCCCAGAGCTTGTCTGGTGCA
TTGTGCGGTGGTGAGAGAGACGGCAAGGCCAGCTTGTGACAGGGGTACAA
AGGGTGGAAGCAAAATATGTACGCCTCCCTCCCTTCCCACGTGCACATCT
GCTTAAATTAATGAGATTTACTTGGGGAGGAGAGGTGACATTCATCTTCA
AGCTGCCATTCATTGCTTAGGACCGGGAAAGCTGCTTTTGATGATAATGT
TTAGATTTTGATTTTGCTTAATGGTTGACGCTCCCCTGTTAACATTCTTA
TCCCTTCCGGGGGATGATTCTGTTTGAAGAACTCTTGCACTTTACATAGA
AAAAATTCAGTTGTGATGACAACCCCCCCCCCTTAGTTTCAGACCCTCTG
TTTGGGTCTGGGCTTAGAGGCTGAGAGAGAGCTACAGCTAGACATACACC
CCCAGGACTGCTTCAGAACCGAGATTCTGTGTGCCCATGTGGAAAGTGTT
GGAAATCTAACTCACATCTGAAGACTTCATTTATATGATCCCACCCACCT
GCAGAATTCAGTGGAACAACTGGTCACCTTTCAGCTTTATTTGTGCAAGA
AGTGGGTTGCCCGGGCATCCCTGTGACTGTGAACCACATAGATACCACTA
TATCCCATAGTCTAAAAATTAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_c06.b1 MSMg01no183_c06.b1 CHROMAT_FILE:
MSMg01no183_c06.b1 PHD_FILE: MSMg01no183_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:04 2005
         (653 letters)



>mm_chr12_55217697_55218749
          Length = 1053

 Score = 1210 bits (626), Expect = 0.0
 Identities = 644/650 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttctagggactgtgcagcacagttggattgtcttcaggacttgcttttcctcc 63
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 853 ggaattcttctagggactgtgctgcacagttggattgtcttcaggacttgcttttcctcc 794

                                                                       
Query: 64  tgatgcttggttaactacaatacaaacattgagaagttcagccctagccaccgtagtccc 123
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 793 tgatgcttggttaactacaatacaaacattgagaagttcagccctagctactgtagtccc 734

                                                                       
Query: 124 aagctgatgccctactggctacccacaccagaagaagcaatggctgtgttgtctcataag 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 733 aagctgatgccctactggctacccataccagaagaagcaatggctgtgttgtctcataag 674

                                                                       
Query: 184 gtgagccatgttagatctctctcatctccaagcccaggtcatggaaattagtcatgctgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gtgagccatgttagatctctctcatctccaagcccaggtcatggaaattagtcatgctgg 614

                                                                       
Query: 244 tgcctgggtgatctttcagcaccagctctgggggacaacagagcctgactgctttgggtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgcctgggtgatctttcagcaccagctctgggggacaacagagcctgactgctttgggtg 554

                                                                       
Query: 304 gccccaaggaaagtacctaagttggacacctatgtggggactgccagcttatatgactta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gccccaaggaaagtacctaagttggacacctatgtggggactgccagcttatatgactta 494

                                                                       
Query: 364 gtaagagtgtagagaagatagaggccaatatataggtgaatgccaggggaggaggagagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtaagagtgtagagaagatagaggccaatatataggtgaatgccaggggaggaggagagg 434

                                                                       
Query: 424 aaagagtcttactttgaattaattctttgaacttgtgtcctctggtcaagttactggttg 483
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 433 aaagagtcttactttgaattaattatttgaacttgtgtcctctggtcaagttactggttg 374

                                                                       
Query: 484 gcatcatctcttgtgtttccacagggacttccccaggcagagtaggcagtgttggtttat 543
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 373 gcatcatctcttgtgtttccacagggacttccccaagcagagtaggcagtgttggtttat 314

                                                                       
Query: 544 agtgacttacagccatatagttgacccagtcccagcttactctcatcctgtatacatttt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agtgacttacagccatatagttgacccagtcccagcttactctcatcctgtatacatttt 254

                                                             
Query: 604 aaagactttggtagttataacatagagagaatttaacactaatagttaag 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaagactttggtagttataacatagagagaatttaacactaatagttaag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_c06.g1 MSMg01no183_c06.g1 CHROMAT_FILE:
MSMg01no183_c06.g1 PHD_FILE: MSMg01no183_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:05 2005
         (295 letters)



>mm_chr12_55062924_55063618
          Length = 695

 Score =  571 bits (295), Expect = e-167
 Identities = 295/295 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccagggcccagagcttgtctggtgcattgtgcggtggtgagagagacggcaaggcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccagggcccagagcttgtctggtgcattgtgcggtggtgagagagacggcaaggcca 260

                                                                       
Query: 61  gcttgtgacaggggtacaaagggtggaagcaaaatatgtacgcctccctcccttcccacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttgtgacaggggtacaaagggtggaagcaaaatatgtacgcctccctcccttcccacg 320

                                                                       
Query: 121 tgcacatctgcttaaattaatgagatttacttggggaggagaggtgacattcatcttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacatctgcttaaattaatgagatttacttggggaggagaggtgacattcatcttcaa 380

                                                                       
Query: 181 gctgccattcattgcttaggaccgggaaagctgcttttgatgataatgtttagattttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgccattcattgcttaggaccgggaaagctgcttttgatgataatgtttagattttga 440

                                                                  
Query: 241 ttttgcttaatggttgacgctcccctgttaacattcttatcccttccgggggatg 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttgcttaatggttgacgctcccctgttaacattcttatcccttccgggggatg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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