BAC Information

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BAC

Clone NameMSMg01-184F20
Chromosome12 (Build37)
Map Location 93,488,518 - 93,488,800
singlet/doubletsinglet
Overlap genenone
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184F20.T7 (MSMg01no184_f20.b1)MSMg01-184F20.TJ (MSMg01no184_f20.g1)
ACCAG376669AG376670
length733771
length of high quality
(start - end)
306 (59 - 364)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no184_f20.b1 PHD_FILE: MSMg01no184_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:42 2005CHROMAT_FILE: MSMg01no184_f20.g1 PHD_FILE: MSMg01no184_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTNNNCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCTTCTTTATGTCCTCTACCATCATCATGAGAT
ATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGA
TTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCT
TCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGG
AGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTT
TGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTT
CAGTGGTCAGAGTTTNCNCTGNATTCCCCCTCCCCTCTCTCAGGGAAGGT
GTACAGTTATCTGGTGTTTGGACCTCCTCCTAAAAGAAGGTCAAGGCCCA
AAACATGATCTTTTCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCA
GTTGTCTGGAGTCGAAGATGTCGCCGCCTCAGAAGCTCTGTGGCTCTTGT
CCGGAAGGAGGCCGGCCGTCTGGAGCTGATGTTGGCGCCGCCTCATAAGC
TCTGTGACTCTTGCCGGGAAGGTGGCTGGTTGTTTGTAGCTGATTACGGC
AGCGTCTTCAGACTCTCTGTGTTTTTCTCTCCCGTCTTATAATTGCTTGG
CTCTTCTGTTTTCCCCCCGTTTTCTCCTTGCAN
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGTTGGATAGCAGTACTTCCTC
ACCCAAAGGGGTTATGGGTTATGTACTCCCTGGCCTTGCATGTCTGGGCA
CAGATGAAATGGACACATATTAACTCTGTCAATTAGATGTGTGACATGAT
TTTGCTTTTGAGAATATTCATTTCTACAGGATGAAAGAGTACATAACTTA
TTAAATATAGATGAAACTTTGAAGATATTCTATGTGGTGCTGAATAACCA
CAAGGCTTATTAAACATGTCAGATCAAATAATCTATGATAAGTGTGAAAC
AAATAGACAGTTTATTTTAGCCCCCCCCCCACCACACACATATAATCCCA
GAACATGGAAGGTGGAAGTGGCTAAAATAAAAAAACTTTCTCTTTCGACA
GTCATTTCACTCACCTTCCTCTTTTATTTACATTCATTCACAACATATTT
ACTATTTTATTATACCTCTATCTCTTCTCTTTTTTTATTCTCATTCCATA
TTATATATTAATAATTTTAATTTTTATTTTATTCATCCTTATCACTTTTA
TTTATTATTTTCTCATCTTCATATTCTACTTCAAACATCACATTTTTCAT
ATTTTAATTTTTATTATAAATAACTCTTTTCTAACTATTTATTCTTCCCC
TACTCTTTACTTCTTTTTACCCTTCTTTTTTATTTTTCCCTTTATATTTA
TTAACTCTACTTCTTTCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_f20.g1 MSMg01no184_f20.g1 CHROMAT_FILE:
MSMg01no184_f20.g1 PHD_FILE: MSMg01no184_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:42 2005
         (283 letters)



>mm_chr12_93488318_93489000
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttggatagcagtacttcctcacccaaaggggttatgggttatgtactccctggcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atgttggatagcagtacttcctcacccaaaggggttatgggttatgtactccctggcctt 424

                                                                       
Query: 61  gcatgtctgggcacagatgaaatggacacatattaactctgtcaattagatgtgtgacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gcatgtctgggcacagatgaaatggacacatattaactctgtcaattagatgtgtgacat 364

                                                                       
Query: 121 gattttgcttttgagaatattcatttctacaggatgaaagagtacataacttattaaata 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 363 gattttgcttttgagaatattcatttctacaggatgaaggagtacataacttattaaata 304

                                                                       
Query: 181 tagatgaaactttgaagatattctatgtggtgctgaataaccacaaggcttattaaacat 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tagatgaaactttaaagatattctatgtggtgctgaataaccacaaggcttattaaacat 244

                                                      
Query: 241 gtcagatcaaataatctatgataagtgtgaaacaaatagacag 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtcagatcaaataatctatgataagtgtgaaacaaatagacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)