BAC Information

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BAC

Clone NameMSMg01-184K22
Chromosome12 (Build37)
Map Location 58,346,301 - 58,481,184
singlet/doubletdoublet
Overlap genenone
Upstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184K22.T7 (MSMg01no184_k22.b1)MSMg01-184K22.TJ (MSMg01no184_k22.g1)
ACCAG376895AG376896
length724722
length of high quality
(start - end)
311 (61 - 371)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no184_k22.b1 PHD_FILE: MSMg01no184_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:09 2005CHROMAT_FILE: MSMg01no184_k22.g1 PHD_FILE: MSMg01no184_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,346,301 - 58,346,608)(58,480,900 - 58,481,184)
sequence
NCTTCCCCNNNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCACTTTGTAGACCATTTTGGTCTCAAAAACC
TGCCTCTGCCTCCCAAGTCCTTGGATTAAAGACATGTGCCACCATACCTG
GACCTTATACTTATTTCTTATTTAATTATTTTCTGGCCTTAAATTTGTTT
ATTCTGTTTGGGTTTATTTGCTTTTGTTATAAATGTTTCTCATTATGCAT
ATTTAATTTGTTAATTTTCTGTTATACACATACACGTTTGCCTTCAGGTA
CTACTTTAGTTATAGTTCACAAGTATTTCTCTGGAATCTTTTCTTTTAAA
ATATGTGTTGTGAATTTGGGATTATTTTTCTCCCAACTCCCCCCGAATTA
AAAATTGATGTAGACACCTCTGCAGTCCGGACTCAAAAAAAAAACACCTG
ATATTATGCGTTGGTGTGCTATCCTTTCTACTCAGATTCTCCTAGTACCC
ACATTGTTTATTAAGTACTGATCTGTTGCCTAGCACTGTAGTTAGGCTGT
TAACAAGAACGTTGTGTAAATGGAGTTGTAAATGCATTTTCTTTTTTTTT
CTTATGCTGGCTACTTTTGCTGAATTTAACGTTTTGAAAATCCCTTTATT
ACATAATTCATAACCCAATTTCTTTTTGATTCCTGGATATTGGATCCCCA
TGCCTATTCTATTTTATTCCACCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATATTACCTCTCAAATAAAAATCT
TTTTCAGGTAAGCTATATCAAATCTATTTGACAATCTAAGATTTTAAAAT
TATATTTTAGGTTGGAGACACTGCATAATATTTTTAAATCCAACAAATTA
TATCCTTGTGTTTTAGACAACAATTGGAACTTGGCATTGTACTTTTCAAA
ATATTGCCATACATACAGCACAAGAGACAACTTAATATATCACTGTCCCC
AGTCACTGGGCACAACTTTGTCTGGAATTTGGTTACTGCAAGTGGCTAAA
ACTGACAGAGTTTTTTTTCTCCCCCCCCCCCCTTTAAGTATTCTCATCCA
GTTTTGCATGAAAACACCACGGGACAATAAAAAAGACATAAAGTGAATAA
TTTTATCAAATACTAACACTAAGTGAATAGAAAAATCAGGTTAAAAATAA
AATAAAAAAATACAACGTTGGTATCTTTTTTTAAAGAAAAGGACCCTTCA
CTCTAAAAGAAAGTTGGGGAAATAGTTTACCTCCCTTCACTTTTCAAACA
CAAAGTCTACGTTGGATACATTTTCATAATCAGAGTAAGTATTGCAACTA
AGAAGGCTATGATCAGGCTCAGATTTATTACTTTGAAAATATATGATGAC
TGTAATTCACAAGTTCTCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_k22.b1 MSMg01no184_k22.b1 CHROMAT_FILE:
MSMg01no184_k22.b1 PHD_FILE: MSMg01no184_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:09 2005
         (311 letters)



>mm_chr12_58346098_58346808
          Length = 711

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactttgtagaccattttggtctcaaaaacctgcctctgcctcccaagtccttg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttgtagaccattttggtctcaaaaacctgcctctgcctcccaagtccttg 263

                                                                       
Query: 64  gattaaagacatgtgccaccatacctggaccttatacttatttcttatttaattattttc 123
           |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 264 gattaaagacatgtgccaccatacctagaccttatatttatttcttatttaattattttc 323

                                                                       
Query: 124 tggccttaaatttgtttattctgtttgggtttatttgcttttgttataaatgtttctcat 183
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 tggccttaaatttgtttattctgtctgggtttatttgcttttgttataaatgtttctcat 383

                                                                       
Query: 184 tatgcatatttaatttgttaattttctgttatacacatacacgtttgccttcaggtacta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatgcatatttaatttgttaattttctgttatacacatacacgtttgccttcaggtacta 443

                                                                       
Query: 244 ctttagttatagttcacaagtatttctctggaatcttttcttttaaaatatgtgttgtga 303
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 ctttagttatagttcacaagtatttctctggaatcttctcttttaaaatatgtgttgtga 503

                   
Query: 304 atttggga 311
           ||||||||
Sbjct: 504 atttggga 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no184_k22.g1 MSMg01no184_k22.g1 CHROMAT_FILE:
MSMg01no184_k22.g1 PHD_FILE: MSMg01no184_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:09 2005
         (285 letters)



>mm_chr12_58480700_58481384
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatattacctctcaaataaaaatctttttcaggtaagctatatcaaatctatttgacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tatattacctctcaaataaaaatctttttcaggtaagctatatcaaatctatttgacaat 426

                                                                       
Query: 61  ctaagattttaaaattatattttaggttggagacactgcataatatttttaaatccaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctaagattttaaaattatattttaggttggagacactgcataatatttttaaatccaaca 366

                                                                       
Query: 121 aattatatccttgtgttttagacaacaattggaacttggcattgtacttttcaaaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aattatatccttgtgttttagacaacaattggaacttggcattgtacttttcaaaatatt 306

                                                                       
Query: 181 gccatacatacagcacaagagacaacttaatatatcactgtccccagtcactgggcacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gccatacatacagcacaagagacaacttaatatatcactgtccccagtcactgggcacaa 246

                                                        
Query: 241 ctttgtctggaatttggttactgcaagtggctaaaactgacagag 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctttgtctggaatttggttactgcaagtggctaaaactgacagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)