BAC Information

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BAC

Clone NameMSMg01-184N03
Chromosome12 (Build37)
Map Location 51,021,924 - 51,022,111
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream genePrkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184N03.T7 (MSMg01no184_n03.b1)MSMg01-184N03.TJ (MSMg01no184_n03.g1)
ACCAG376990AG376991
length768728
length of high quality
(start - end)
193 (62 - 254)534 (77 - 610)
definitionCHROMAT_FILE: MSMg01no184_n03.b1 PHD_FILE: MSMg01no184_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:21 2005CHROMAT_FILE: MSMg01no184_n03.g1 PHD_FILE: MSMg01no184_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATTCTTTTTTTGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCAGAGCATGTATATGTATATGTGTGTGTGT
GTGTATGTGTATATCTTAGTGGTGCACTCCAATTTCTCTTCCTTGTTTTG
TTTTTAATTTTAGAGCTTTGAGAATGAAAGGGTATGGGATATGAATCTCA
GCTGAAGATTTTGCCCTCAAAGGATAAAATAAAAATTTGCGGGGATACTT
TACCGTAATTTTAAGACACTTAATCTTTTAAAACTAACTAAGACATTTTT
AAAGATATGCATACACACAGGCTCACACACATACTCACAGACAAACAGCA
CCCCCCTCATACTCACACACACTTTTTTTTTTACCCCCCCCCCCCCGATA
TATATATATGATATATATATATATATGTGTCCCTATAAAATAATATTTTC
CTCACTTGTTTGCTCCCTCTCTTTTCTTCTTTTCTCTTTTCCTTTTTTTC
ACTTCCCCCTTTTTTATTTCTCCCCCTACTTTTTTATCCCACTATTGCAC
TTTCCACCCCCCACGCGCACTTTTCTTTCTCGAATCTTTTTAAGTCCTCT
TCTTTACCACCAACAATCCCGACATCTTCCTTCTAATCTATCGCCAAAAT
AATACTTCCTTACACACTATCTACAAACTCACTCCTTTCCCCCTTTTTCC
CCCTTCCCCTATTTTTTTATTTTCCCCCCCTTCATTCTAACACATATTCT
TACCCACACCCATTATTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTAGCTTTGTTCCCTGTTTTT
TAATAGGCTTGTTTGTTTCTCTGGAGTCTAACTTCTTGAGTTCTTTATAT
ATATTGGATATTTGTCCTCTGTCATATTTAGGATTGGTAAAGGTCTTTTC
CCAATCTGTTAGTTCCCTTTTTGTCCTATTGACAGTGTCATTTGCCTTAT
AGAAGCTTTGCAATTTTTTTTTTTTTGAACTTGATGCGAGATTTATTATT
GAACGATTTGGTAGGGTATAGGAGAGAACTATTGAAGCCTTCAGGAATGC
AGGGCTCTCTATTTGTCCAGAGCACCACGATTGGGGATATATTTGACACC
ACAGCCATCAGGAATGAGCCGCTTCTCAACAACCATGTCTTCAAATTCAT
CTGCATTAAACTTGGTGAAGCCCCACTTCTTTGAGATGTGGATCTTCTGG
CGGCCAGGGAACTTGAACTTGGCTCTTCACAGAGCCTCAATCACATGTTC
CTTGTTCTGCAACTTGGTTCGGATGGACATGATGACCTGGCCAATTTGAA
CCCTGGCCACGGTGCCGTGGGGCTTCCCAAAGGCACCATGCATCCCTGTC
TGGAGCCTGTCAGCCCCAGCACAGGACAACATCTTGTTGATATGGATGAC
ATGGATAGGGTGGAGCCTCCCTCGGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_n03.b1 MSMg01no184_n03.b1 CHROMAT_FILE:
MSMg01no184_n03.b1 PHD_FILE: MSMg01no184_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:21 2005
         (193 letters)



>mm_chr12_51021671_51022262
          Length = 592

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%), Gaps = 1/189 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagagcatgtatatgtatatgtgtgtgtgtgtgtatgtgtatatcttagtggtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaattcagagcatgtatatgtatatgtgtgtgtgtgtgtatgtgtatatcttagtggtg 382

                                                                       
Query: 64  cactccaatttctcttccttgttttgtttttaattttagagctttgagaatgaaagggta 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 cactccaatttctcttccttgttttgtttttaattttagagc-ttgagaatgaaagggta 323

                                                                       
Query: 124 tgggatatgaatctcagctgaagattttgccctcaaaggataaaataaaaatttgcgggg 183
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 322 tgggatatgaatctcagctgaagattttgtcctcaaaggataaaataaaaatttgcgggg 263

                    
Query: 184 atactttac 192
           |||||||||
Sbjct: 262 atactttac 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 592
Length adjustment: 8
Effective length of query: 185
Effective length of database: 584
Effective search space:   108040
Effective search space used:   108040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)