Query= MSMg01no184_p19.b1 MSMg01no184_p19.b1 CHROMAT_FILE:
MSMg01no184_p19.b1 PHD_FILE: MSMg01no184_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:35 2005
(314 letters)
>mm_chr12_90818606_90819325
Length = 720
Score = 480 bits (248), Expect = e-140
Identities = 305/346 (88%), Gaps = 36/346 (10%)
Strand = Plus / Minus
Query: 5 gaattctcaacctgcctttactcattcagtggaagtgggagttactcagacaccttcagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaattctcaacctgcctttactcattcagtggaagtgggagttactcagacaccttcagt 303
Query: 65 ------ggcactgtgccaggaaatagaactacaaagacaatttattctgatctagttgta 118
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 302 gagccaggcactgtgccaggaaatagaactacaaagacaatttattctgatctagtcgta 243
Query: 119 ggagagtttctcccctcaaggtgtatgcat------agtgagaggaag------------ 160
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 242 ggagagtttctcccctcaaggtgtatgcatagtgagagtgagaggaaggagagagagaga 183
Query: 161 ------------gagagagagagagagagagagagaggccagcaattaaatataaagtgt 208
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gagagagagagagagagagagagagagagagagagaggccagcaattaaatataaagtgt 123
Query: 209 gaactgttacagaaaaggctaactcagcacataacctgcagtgtacaaggtcatgaaatg 268
||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 122 gaactgttacaaaaaaggctaactcagcacataacctgcagtgcacagggtcatgaaatg 63
Query: 269 attcttggcagaggtcagagtctgagccctgagagtcaagtatgaa 314
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 62 attcttggcagaggtcagagtctgagccctgagagtcaattatgaa 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 720
Length adjustment: 9
Effective length of query: 305
Effective length of database: 711
Effective search space: 216855
Effective search space used: 216855
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no184_p19.g1 MSMg01no184_p19.g1 CHROMAT_FILE:
MSMg01no184_p19.g1 PHD_FILE: MSMg01no184_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:35 2005
(497 letters)
>mm_chr12_90648008_90648904
Length = 897
Score = 922 bits (477), Expect = 0.0
Identities = 492/497 (98%)
Strand = Plus / Plus
Query: 1 atcacaagaccaaaaccaaaggatcagaactactcaggtctgcttctccaaaggagtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcacaagaccaaaaccaaaggatcagaactactcaggtctgcttctccaaaggagtaat 260
Query: 61 aatatctaaacattcatctggctggattgtcaaagacctatgtattctgtagtatatgct 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aatatctaaacattcatctggctggattgtcaaagacctgtgtattctgtagtatatgct 320
Query: 121 ggctttaaagctgagatctaattgtctttatctttctgagataatgctggagtgacaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctttaaagctgagatctaattgtctttatctttctgagataatgctggagtgacaaaa 380
Query: 181 ttacatcttgggagaaaaaaaagggggggagggggaatctttcattctcacactggaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacatcttgggagaaaaaaaagggggggagggggaatctttcattctcacactggaaaa 440
Query: 241 gtcagagtatactgagaaagtgccaacaaaccctaaataattttgtgttgattatctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagagtatactgagaaagtgccaacaaaccctaaataattttgtgttgattatctgaa 500
Query: 301 attcgaatcgtgatggttataatcatttgatccctgaggcaccaccgaaaattcagcatt 360
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 501 attcgaatcgtgatggttataatcatttgatccctgaggcattaatgaaaattcagcatt 560
Query: 361 attttgtgtggaatatgtatcattactcctgtgtgaggaatgattattagtaagtctgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttgtgtggaatatgtatcattactcctgtgtgaggaatgattattagtaagtctgat 620
Query: 421 taaatctggaagcgtgacatgagctatctttaacccgctaatgacagggccatattgtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaatctggaagcgtgacatgagctatctttaacccgctaatgacagggccatattgtaa 680
Query: 481 ttttatgatgaatgaac 497
|||||||||||||||||
Sbjct: 681 ttttatgatgaatgaac 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
