BAC Information

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BAC

Clone NameMSMg01-185B01
Chromosome12 (Build37)
Map Location 46,614,368 - 46,614,605
singlet/doubletsinglet
Overlap genenone
Upstream geneNrcam, EG620025, Stxbp6
Downstream geneLOC664952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185B01.T7 (MSMg01no185_b01.b1)MSMg01-185B01.TJ (MSMg01no185_b01.g1)
ACCAG377167AG377168
length736736
length of high quality
(start - end)
534 (63 - 596)239 (141 - 379)
definitionCHROMAT_FILE: MSMg01no185_b01.b1 PHD_FILE: MSMg01no185_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:41 2005CHROMAT_FILE: MSMg01no185_b01.g1 PHD_FILE: MSMg01no185_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTTTTNTTGNGCCGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTCACCTGAGGAATACTGAATGGCTGACA
AGCACCTGAAAAAATGTTCAGCATCCTTAATCATCACGGAAATGCCAATC
AAAACAGCCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGAATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA
GTCTGGCAGTTCCACAGAAAATTGGACATAGTACTTCCAGAGGATCCCGC
AATACCTCTCCTGGGCATATATCCAGAATATGTTCCTACTGCTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCTAGATGCCCCTCAAGAGAGGAATGGATACAGAAAATGTG
GTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGACATTCCTAGGCAAATGCATTGATCTGGAGGGCATCATCCTGAGTGAG
GTAACCGAGTTACAGAAGAACTCACATGATTTGTACTTACTGAGAAGTGA
TATTAGCCCAGAAATTTAGAATAGTCNATATACACAATAAGAATCACATG
AAACTCAAGGAGAACGAAGACCAAAGTGTAAACACT
NTTATAAATCCNCTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTGTGC
TGACCCTGCTCACATACAGTGACCCAACCGATTTCCCTGTTTCACTGCAG
CAGCATTTCTTGTGAGGGCTTTGCCAGTTCTGTGTGATCTGTGTGATTTG
GGTTATTTGTAACTAGGGCTGCTCAACCTGAGAGGGTTCTCATTTCCAGG
ATAGGTAGTAAAAATAGATTTCTTCACTGAATAAAATAAAATAGCATGGA
TTCACATAAAGAATGAGGAGTTGGTTATTACAACAAAAGGAAGAGATAAC
AATAGTGAGCTAAGGAATTCTGTCTTTATTCATCACGCTCTTCTTCCCTT
TTAACAATAAAAGTGTGCTTATGTTATGCTTTGAGAGGGGTGAAATTGAG
AAAATTGCCAAGTGCTATGCTGAGAGTAGCTATTTCTTGATGTCTATACA
GACCTTGGCTTAAAATGAATCTTTCAGATGTAGATAAGTAATATATTTTC
AAAAAGGACTTACCTGGCTTACAATTGCAAATTTCTGTGTTCTCTACCTC
TATCTCTTTCAAGTGTCTCTATGTTCTCTTTCTCTATGTTTCTAAGTTAG
ACTGAAAATTCAAGTTTATGTCTTTGTCATTTTAGTCCTCTGATATGCAC
AAATTTATGATAGTTTCTGCAGGCTCTTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_b01.g1 MSMg01no185_b01.g1 CHROMAT_FILE:
MSMg01no185_b01.g1 PHD_FILE: MSMg01no185_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:41 2005
         (239 letters)



>mm_chr12_46614168_46614806
          Length = 639

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcactgcagcagcatttcttgtgagggctttgccagttctgtgtgatctgtgtgatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttcactgcagcagcatttcttgtgagggctttgccagttctgtgtgatctgtgtgatttg 379

                                                                       
Query: 61  ggttatttgtaactagggctgctcaacctgagagggttctcatttccaggataggtagta 120
           |||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 378 ggttatttgtaactaggggtgctcaacctgagagggatctcatttccaagataggtagta 319

                                                                       
Query: 121 aaaatagatttcttcactgaataaaataaaatagcatggattcacataaagaatgaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaaatagatttcttcactgaataaaataaaatagcatggattcacataaagaatgaggag 259

                                                                     
Query: 181 ttggttattacaacaaaaggaagagataacaatagtgagctaaggaattctgtcttta 238
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttggttgttacaacaaaaggaagagataacaatagtgagctaaggaattctgtcttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)