BAC Information

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BAC

Clone NameMSMg01-185B08
Chromosome12 (Build37)
Map Location 113,276,082 - 113,434,180
singlet/doubletdoublet
Overlap geneTdrd9, A530050D06Rik, Kif26a
Upstream geneRcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943
Downstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185B08.T7 (MSMg01no185_b08.b1)MSMg01-185B08.TJ (MSMg01no185_b08.g1)
ACCAG377180AG377181
length814845
length of high quality
(start - end)
266 (63 - 328)103 (185 - 287)
definitionCHROMAT_FILE: MSMg01no185_b08.b1 PHD_FILE: MSMg01no185_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:42 2005CHROMAT_FILE: MSMg01no185_b08.g1 PHD_FILE: MSMg01no185_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,276,082 - 113,276,342)(113,434,078 - 113,434,180)
sequence
TTCATAATTTCNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTTTCCCTTATCCTTAGGATAAAAATGTC
AAGAGGAAGTTTTATGTTCATTCGTTTTCCCTTTACATCCTGTATCATTT
ACTGTCTTTCTGCTCTAAGAGGTGAATAATATTTCTAGTGCCTGTTTGAT
AATCATGTATTTTGTGTTAGCATTATATTGAGCTGAGTGTGGACTCTTTT
TTTTAAAAAAAATACGTTTTTATAAAAGATTTGTGTATATGAGTGCTCTA
TCTGCATGTCAAAAGAGGGTATCAGATTCCCTTATTTACTGCTTTGAGCC
ACCCTGTGGCTGCTGGAGATTAATTTTGGTACCCCCCGAGCGAGGCCCCC
CATTTTTTTTTTTGTGGAGGGTGTGTTTGTATTGTTGGAAAAAAAGTATT
AAAAAAATTGGGTGGGGGGGGGGCGGTAATTTAAATTTTTTTCTCTCTCA
CATCAATATTGCTAGATTGCTTTTTACGTTACATATCACTTTTTGGAATA
TTGCTGTCCATAACCACTCATTCCCAACCTACTTCCCTATACATCAGTAT
ATTTCCCCCCTTCCGTTACTGAGATTTCACTTTTTCCTTCCCTGATCCCT
CTGTTCCTATATCATTTTCCTTCTGGGTGCTGAAACTACACTCCCTCCCT
ACTGATCGCTACACAATTCGTTATTAATTTTTATTTTTCCTCTTAAATAT
TGCTAATTCACTATTACTTTTTCTTTGTATCCCTTCTCTTCTTTCTCTTT
TCTTTCTTTTTTTC
TATTTTTTTGTTATCTCCCTNTGTTATCCTCTTACTCNNNNCAACTATGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCCAATGAAAAAAGACCCTGTCTAGACTATGATATTGTTTAC
ACTGTGCCATTGTTTTCTCCAAAAAAAAATATGAAAGGGAAATCTGATAG
GCCATGAATTGGAAGGAGAAAGGGGTCATCTTATGCCCATGTAGTCTGCT
ACCCACCTCATAAATACTCATAAAAAGGCTCTTAACACCCAGCCAGAGCC
CACTGTACTGGCGCCACTGGGCCTTTGGTCTGCCTGCCTCAGTCTTTCCC
TGGTGTGCACTAGACAATTTTCTCGTGCTAAAGAAACTTCTCTGACTGTG
TCTCTCAGTTTATTTCTTCCCTCCCCCACCACAAAAGTCAAAGAGGAAAC
CTTTACCCAATAGCAGATAAGCTGGAAAAAAAAAGAACGGAGGAGAGGAG
GGAAAACTGGTTGCCAAGTTATTGACGGAGTGTGAAGGATGAAGGATGCC
TGTCTATATGAAAGTTGTTGCATGATATTGACATTGAATAAGATAAATGT
TGAGATTATATTTGTTCTCTTCTAAGTGATAATATTATTATCAATGACTT
GAGTATTGTGTATACGTATAGATAAGTGCGAATAGTGAGAGAATAATGTA
CTATTAGTAGACGTATAAAGCTAAGTTTTTTACTCCATTATAAGGGAAAG
TCTGAACGCGACGCGATAATTTCTTGCATATAAACTATTGACGTTAATAG
ATCGTATATGGAGTGGAGTTCTATTAATCCTTTATTTTGTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_b08.b1 MSMg01no185_b08.b1 CHROMAT_FILE:
MSMg01no185_b08.b1 PHD_FILE: MSMg01no185_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:42 2005
         (266 letters)



>mm_chr12_113275879_113276542
          Length = 664

 Score =  470 bits (243), Expect = e-137
 Identities = 258/263 (98%), Gaps = 2/263 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcccttatccttaggataaaaatgtcaagaggaagttttatgttcattcgt 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttcccttatt-ttaggataaaaatgtcaagaggaagttttatgttcattcgt 262

                                                                       
Query: 64  tttccctttacatcctgtatcatttactgtctttctgctctaagaggtgaataatatttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttccctttacatcctgtatcatttactgtctttctgctctaagaggtgaataatatttc 322

                                                                       
Query: 124 tagtgcctgtttgataatcatgtattttgtgttagcattatattgagctgagtgtggact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tagtgcctgtttgataatcatgtattttgtgttagcattatattgagctgagtgtggact 382

                                                                       
Query: 184 cttttttttaaaaaaaatacgtttttataaaagatttgtgtatatgagtgctctatctgc 243
           |||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 cttttttt-aaaaaaaataggtttttaaaaaagatttgtgtatatgagtgctctatctgc 441

                                  
Query: 244 atgtcaaaagagggtatcagatt 266
           |||||||||||||||||||||||
Sbjct: 442 atgtcaaaagagggtatcagatt 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 664
Length adjustment: 9
Effective length of query: 257
Effective length of database: 655
Effective search space:   168335
Effective search space used:   168335
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no185_b08.g1 MSMg01no185_b08.g1 CHROMAT_FILE:
MSMg01no185_b08.g1 PHD_FILE: MSMg01no185_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:42 2005
         (103 letters)



>mm_chr12_113433878_113434380
          Length = 503

 Score =  199 bits (103), Expect = 3e-56
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggaaatctgataggccatgaattggaaggagaaaggggtcatcttatgcccatgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagggaaatctgataggccatgaattggaaggagaaaggggtcatcttatgcccatgtag 244

                                                      
Query: 61  tctgctacccacctcataaatactcataaaaaggctcttaaca 103
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tctgctacccacctcataaatactcataaaaaggctcttaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 503
Length adjustment: 8
Effective length of query: 95
Effective length of database: 495
Effective search space:    47025
Effective search space used:    47025
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)