Query= MSMg01no185_e01.b1 MSMg01no185_e01.b1 CHROMAT_FILE:
MSMg01no185_e01.b1 PHD_FILE: MSMg01no185_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:54 2005
(317 letters)
>mm_chr12_95045077_95045793
Length = 717
Score = 571 bits (295), Expect = e-167
Identities = 307/311 (98%)
Strand = Plus / Plus
Query: 5 gaattcctaacatgagcggctggagagatctttatcaatagcagaagtgagctgagttcc 64
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcctaacaggagcggctggagagatctttttcaatagcagaagtgagctgagttcc 264
Query: 65 acctgcttatcccgcttcaaactgaaatatctggaacttcagattcagtgggattcagtg 124
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctgcttatcaagcttcaaactgaaatatctggaacttcagattcagtgggattcagtg 324
Query: 125 tttctggcctattaggaaatctctactcacatacacacgcatacagagagatataaagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttctggcctattaggaaatctctactcacatacacacgcatacagagagatataaagtt 384
Query: 185 tatacaaaaaaataaatctcaagtgtttctaaaaagacgcctgctactcatccatcatta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatacaaaaaaataaatctcaagtgtttctaaaaagacgcctgctactcatccatcatta 444
Query: 245 ttctattgcctatttttcagaatcccatactgtgcttgatattaatttactctcttaatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctattgcctatttttcagaatcccatactgtgcttgatattaatttactctcttaatt 504
Query: 305 acccactgtga 315
|||||||||||
Sbjct: 505 acccactgtga 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_e01.g1 MSMg01no185_e01.g1 CHROMAT_FILE:
MSMg01no185_e01.g1 PHD_FILE: MSMg01no185_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:54 2005
(420 letters)
>mm_chr12_95184559_95185380
Length = 822
Score = 600 bits (310), Expect = e-176
Identities = 372/404 (92%), Gaps = 22/404 (5%)
Strand = Plus / Minus
Query: 1 aacacagctacagactgtcaaggagagattaatagttgctggcgatagtttatagtggaa 60
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 499 aacacagctacagactgtcaaggggagattaatagttgctggggatagtttatagtggaa 440
Query: 61 caagtcttaaagtatggtggagagactactaactagttaagtaggcaagtaaccatgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caagtcttaaagtatggtggagagactactaactagttaagtaggcaagtaaccatgata 380
Query: 121 ggaatctataattagcacacacaagatttactcatatgatcttgttaattttggcaatca 180
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 379 ggaatctataactagcacacacaagatttactcatatgatcctgttaattttggcaatca 320
Query: 181 taaaaatagaaagtagagaataatattaagaataatttcagcagaagcatgagaataaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 319 taaaaatagaaagtagagaataatattaagaataatttcagcagaagcatgagaagaaat 260
Query: 241 atgcatgataccatcagattataag--aaatattacttactataacacacagaaatccct 298
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 259 atgcatgataccatcagattataagtaaaatattacttactataacacacagaaatccct 200
Query: 299 ctctgtgtctttccccctctctgtgtctttctgtctctatatctctgtctccctgtctct 358
||||||||||||| ||| |||| ||||||||||||||| ||||||
Sbjct: 199 ctctgtgtctttc--------tgt----ttct------atatctctgtctccccgtctct 158
Query: 359 ctgtctctgtctttctgtctcactctgtctgtctgt--gtctgt 400
|||||||||||| ||||||| || ||||||||||| ||||||
Sbjct: 157 ctgtctctgtctgtctgtctggctgtgtctgtctgtctgtctgt 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 822
Length adjustment: 9
Effective length of query: 411
Effective length of database: 813
Effective search space: 334143
Effective search space used: 334143
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
