BAC Information

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BAC

Clone NameMSMg01-185G07
Chromosome12 (Build37)
Map Location 114,428,319 - 114,554,364
singlet/doubletdoublet
Overlap geneIgh, Igh-2, Gm900, Igh-1b, Igh-3
Upstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
Downstream geneIghg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185G07.T7 (MSMg01no185_g07.b1)MSMg01-185G07.TJ (MSMg01no185_g07.g1)
ACCAG377399AG377400
length707714
length of high quality
(start - end)		308 (36 - 343)278 (77 - 354)
definitionCHROMAT_FILE: MSMg01no185_g07.b1 PHD_FILE: MSMg01no185_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:04 2005CHROMAT_FILE: MSMg01no185_g07.g1 PHD_FILE: MSMg01no185_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,554,061 - 114,554,364)(114,428,319 - 114,428,596)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCAT
TCATGTGTCTTCAAGAAAACAGACATAGGCATCTATCCCAGAAACCTACT
CTCAAGGAGCAGGATCATGGGCAAAGGTAGAAAGACAGGACCCAGTGCTT
TGACCTGAGGTGCTCTCCCTGGGCACAACTCTTCATGGTGGTTGATCTAG
GGAAGAAAAATCACACAAGCCTGACCTTCAATGGACCATACCGCTGCTGA
ACTCATCTCATCCATTTTCTACTCCATCTTGGTACTATTGGCCAGATGAG
TCATATTGCAGGCAATGTCCTGGCTAGTCCAGATGCTGGCAGGTATTATC
ACTGCCCTCCTGACCGAATACACCATCAACTACAAGACAAAAATGTTAAC
CTGCACATATCACTGAACAAAGTTCCACACTTCCAAGACATGGTTACTGG
CTCAGGGAAGTAGCCCTTGACCAAACAACCCAGGTGGCCATGGGAACCAG
GGACTAGATGGACAGGGTTATTGTTCTGGCTGCAAATGGGGGGATTTGAA
CATACTGTTCAGGCTAAAGAAGCCCTTTTCTCCATGCAACCCTGGGTCCT
CTAGGATGGAAGATATGCCTGCACTTCATGGACCTAGCCAATCTCTATTC
CCTATGACCATAGACCCTACCCTTAGTCCCAGTATATTGCTTTTACCCCT
CATCCTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCAGACCTTGGAGTGTTTCTCTG
TGGCATCTGGGGGAGGGACCTTCATGAGGCTGTTTGGGGAGCCTTACCTG
TGAGAGGTGAGGGTCACATAGATTCCTGACCCGGCATCTGCAGTGCCATG
CAGACCTACGGCCTGCCAGGCCTGCGTTCACTGCATTGCCCGGTCCCTTA
CATTCACCTCCCCTGAAGCGAGGATCCACGCCCTGCGATCCGGACGGAGC
AAGGGTTTTGCTGTCCAGTCTGTCACTGGTTGTAGAGGGGTGTAGACCAG
ACCCTTTTGTTTCCCCCCCCCCCCCCTCCGTTCCTGTGCCCACTTCTGGA
TGCACCGGCTGCCCCCTTCTCTACCCAGAGAGCTGCTTCGCTGAGTCTGG
ACTTGGAGTCACCTGTTTTGCAGGCAGCTGTCCTTGGAGATCATTCTCTC
CACGGGTACAGGGGCCACTCATGGCTACACCCCTGACCCGGTGGAGTACG
GCAGTGCCTCTCTGCCTGCCCTACTGAGCTTTGTCTCCGCTACTGATCAC
AGTGCCTGATGAGCATCCTTGAAACCTTGGCTTTGGGTTCCACACTCCCA
TGACACCGCCATCCACCGACAGTTCTTAAAGAGTGTAGGCCTATGGTATT
CAGGGTCCAAACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_g07.b1 MSMg01no185_g07.b1 CHROMAT_FILE:
MSMg01no185_g07.b1 PHD_FILE: MSMg01no185_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:04 2005
         (308 letters)



>mm_chr12_114553857_114554564
          Length = 708

 Score =  580 bits (300), Expect = e-170
 Identities = 303/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcattcatgtgtcttcaagaaaacagacataggcatctatcccagaaacctac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaattctgcattcatgtgtcttcaagaaaacagacataggcatctatcccagaaacctac 449

                                                                       
Query: 65  tctcaaggagcaggatcatgggcaaaggtagaaagacaggacccagtgctttgacctgag 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tctcaaggaggaggatcatgggcaaaggtagaaagacaggacccagtgctttgacctgag 389

                                                                       
Query: 125 gtgctctccctgggcacaactcttcatggtggttgatctagggaagaaaaatcacacaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gtgctctccctgggcacaactcttcatggtggttgatctagggaagaaaaatcacacaag 329

                                                                       
Query: 185 cctgaccttcaatggaccataccgctgctgaactcatctcatccattttctactccatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cctgaccttcaatggaccataccgctgctgaactcatctcatccattttctactccatct 269

                                                                       
Query: 245 tggtactattggccagatgagtcatattgcaggcaatgtcctggctagtccagatgctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tggtactattggccagatgagtcatattgcaggcaatgtcctggctagtccagatgctgg 209

               
Query: 305 cagg 308
           ||||
Sbjct: 208 cagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_g07.g1 MSMg01no185_g07.g1 CHROMAT_FILE:
MSMg01no185_g07.g1 PHD_FILE: MSMg01no185_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:04 2005
         (278 letters)



>mm_chr12_114428119_114428796
          Length = 678

 Score =  538 bits (278), Expect = e-157
 Identities = 278/278 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagaccttggagtgtttctctgtggcatctgggggagggaccttcatgaggctgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accagaccttggagtgtttctctgtggcatctgggggagggaccttcatgaggctgtttg 260

                                                                       
Query: 61  gggagccttacctgtgagaggtgagggtcacatagattcctgacccggcatctgcagtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagccttacctgtgagaggtgagggtcacatagattcctgacccggcatctgcagtgc 320

                                                                       
Query: 121 catgcagacctacggcctgccaggcctgcgttcactgcattgcccggtcccttacattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgcagacctacggcctgccaggcctgcgttcactgcattgcccggtcccttacattca 380

                                                                       
Query: 181 cctcccctgaagcgaggatccacgccctgcgatccggacggagcaagggttttgctgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcccctgaagcgaggatccacgccctgcgatccggacggagcaagggttttgctgtcc 440

                                                 
Query: 241 agtctgtcactggttgtagaggggtgtagaccagaccc 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtctgtcactggttgtagaggggtgtagaccagaccc 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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