BAC Information

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BAC

Clone NameMSMg01-185L22
Chromosome12 (Build37)
Map Location 47,306,922 - 47,307,238
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC664952, Nova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185L22.T7 (MSMg01no185_l22.b1)MSMg01-185L22.TJ (MSMg01no185_l22.g1)
ACCAG377639AG377640
length761759
length of high quality
(start - end)
321 (60 - 380)637 (77 - 713)
definitionCHROMAT_FILE: MSMg01no185_l22.b1 PHD_FILE: MSMg01no185_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:32 2005CHROMAT_FILE: MSMg01no185_l22.g1 PHD_FILE: MSMg01no185_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTTTTTNNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCAATATTACTGGAATGACAAATTCTTGTAGAA
AACCACATATTAAAAAAAATCTGTCTACTTATCTAACTTACCCAGTATAT
AGAACCAAGAGTAAATGGGAGTTGAAATGTACATTCTTGACTGCACAGTG
GAGAGAAGAAATTACGCCTGTAATATATAAGTCATGTAGAAATTATTTTA
TAGCTCATCAACTAAAATTCATATCATTCATTATTTTCAAGACTTGATGG
AAAAGTACTTTGCTTTCAGTGATTTCCTTACTGAAAGGTTAGAGATGGAA
ATGCTTTAAATTTGCAAAATTCTAGAAGTTTTTTATGCCCCGCCCCCGCC
CGTTGTATGGGTTTAGTTACTCTGCCACAACACTGCACGGAACAAATGAA
AAAAGGGCAGTACGGAAACAAAGGCTATGCAATAAGGCACCAAACCCAGG
AATATACTTATACTTTTGAAAATAACATGAAAAAAATGTTAATCATTTTA
TTGCTTCAAAACCGTTTATCTTTAAACATAAGAAAATGTATTGTATTAGC
CCACTCTTTTCATTGCCTTAAGGAAATACAATGCCTGAGGCTGGATAGTT
TACTCAGAAAAGTGGTTTACATAGCTTGAAGTTTCATAAATTTAGTGGTA
CTTGCAAATGCTGGCAATTCCCCACGATAGGTAAATCATATTCACAGTGG
CAGTACTTAAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTACCTGAGGAATACCAAATGGCT
GAGAAACATCTGAAAAAAATGTTCAGCATTCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAG
ATCAAAAACTCAGGTGACAGCAGATGCTGGAGAGGATCTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTACAAGCTTGTACAACCACCCTGGA
AATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTATCAGAGGAT
CCTGCAATACATCTCCTGGGCATATATCCAGAATATATTCCAACTGTTAA
GAAGGACACATGCTCCACTATGCCCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCCACAGAGGAATGGATACAAAAA
ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCCAGGCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTCTAGAAACTGCCATATTCAGGGATCCATCCCATAATCAGCCTTCAAAC
GCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATA
TAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGA
TGCTCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_l22.b1 MSMg01no185_l22.b1 CHROMAT_FILE:
MSMg01no185_l22.b1 PHD_FILE: MSMg01no185_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:32 2005
         (321 letters)



>mm_chr12_47306718_47307439
          Length = 722

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%), Gaps = 1/317 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatattactggaatgacaaattcttgtagaaaaccacatatt-aaaaaaaatct 63
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 521 gaattcaatattactggaatgacaaattcttgtagaaaaccacatattaaaaaaaaatct 462

                                                                       
Query: 64  gtctacttatctaacttacccagtatatagaaccaagagtaaatgggagttgaaatgtac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtctacttatctaacttacccagtatatagaaccaagagtaaatgggagttgaaatgtac 402

                                                                       
Query: 124 attcttgactgcacagtggagagaagaaattacgcctgtaatatataagtcatgtagaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 attcttgactgcacagtggagagaagaaattacgcctgtaatatataagtcatgtagaaa 342

                                                                       
Query: 184 ttattttatagctcatcaactaaaattcatatcattcattattttcaagacttgatggaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttattttatagctcatcaactaaaattcatatcattcattattttcaagacttgatggaa 282

                                                                       
Query: 244 aagtactttgctttcagtgatttccttactgaaaggttagagatggaaatgctttaaatt 303
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 281 aagtactttgctttcagtgatttccttactgaaaggttagagacggaaatgctttaaatt 222

                            
Query: 304 tgcaaaattctagaagt 320
           |||||||||||||||||
Sbjct: 221 tgcaaaattctagaagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)