BAC Information

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BAC

Clone NameMSMg01-186A08
Chromosome12 (Build37)
Map Location 57,131,964 - 57,132,281
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915
Downstream geneLOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186A08.T7 (MSMg01no186_a08.b1)MSMg01-186A08.TJ (MSMg01no186_a08.g1)
ACCAG377835AG377836
length794748
length of high quality
(start - end)		324 (45 - 368)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no186_a08.b1 PHD_FILE: MSMg01no186_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:53 2005CHROMAT_FILE: MSMg01no186_a08.g1 PHD_FILE: MSMg01no186_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTGCTAGCTAGTTATTAGTTGATAATAGCAGTGTGCAGCAGCA
GGAGAGGTTTTTTCATCCATTAGGAAAGTAAACAAAACTTAGGAATGTAT
TGGATAATCCCAACAGCAACTCCTGCCTCCACGCTTCAGTTGTTCAGAAA
AGACAAGTTGTCTTCATAGCTATGAGGACTGTCATAAGGCTTTCTGATTA
TTCTTGTAAATGGGCTGTATTTTCTTTTCTTCTTCTTTTTATAATTGGGT
ATTTATTTCATTTACATTTCCAATGCTATTCCAAAAGTCCCCCACACGCT
CCCCCACCTACTCCCCTATTTTTTCACTCCCACTTCCTGGCCCTGGCATT
CCCCTGTACTGAGGCATACAACGCTTGCACGTGCAAAGAACCTCTCTTTC
CACTGATGGCTGAATAGGCCATCTTCTTATTCATATGCAGCTAAGTACAC
GAGCTCTGGGGAGGGGGGTATTGTTTATACAAATACCATTTTTATATATT
TTACGATAACTTTATTTTTTCAGGTACGATTCATTTTCTCATATATCTCC
CGTTTTGTTTTTTTACGATTATTTTTAAATATAACATATAATTTTTATAT
AAATGATGTCATCTGATACAACTCTATTTCTACATATATTCATTTTTTTT
CCGACTTTTATGTTGCCCTCTACTAACTTCCTTCTTACACACCGTATCTC
TTGTTATTTTTATTTATTTAACCGATATATTCTAATCTACTCAG

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACATTTTCATTTGAAGGCTGCTA
GGAGAGGACTGGCTTCCAGGCATCAATGGGGAGAGTCTTAAAGTCCACAC
CCACAGTGACACACCTATTCCCAAAAGGCCACACTTCCTAATAGTGCCAC
TCCTCAGGGCAAACCATATACAGACTATGACATCTAATATCCAAAATTTA
TAAAGAACTCAAGAAGTTAGATACCAACAACCCAATAACGCAATTTTAAA
AAATGGGGTACAGAGCTAAACAGGGAGTTCTCATCAGAGGTATCTTGAAT
GGCCTAGAAACAAAGAAATGTTCAAGGACTTTAGCTATCAGGAAATATAA
ATCAAAATGACTGAGATTTATCGCACACAAGCCAAAACAGCTAAGATCAA
AAACTCAAGAGATAGCACATGCTGGCAAGCTCCATTGCTTGTATGGAGTG
CAAACTTGATTAAGCACTTTGGAAATCAAGTTGGCATTTTCCCAGGAAAC
TTGGAATCGTTCTGCCTCAAGACCCAGCTGTACCACTCATGGACATAAAC
CTAAAAGATGCCTGACTGTACCACTGGGACACTTGCTCACCTATGTTTAT
AGGAGGCTTTATTAATAATAGTCTGAAAATGGGAACAACCCACATGGATC
CTCTTATGGAAAAAGGGTAAAAAAATCGTGGTCACTCTTATCCGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_a08.b1 MSMg01no186_a08.b1 CHROMAT_FILE:
MSMg01no186_a08.b1 PHD_FILE: MSMg01no186_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:53 2005
         (324 letters)



>mm_chr12_57131760_57132482
          Length = 723

 Score =  572 bits (296), Expect = e-168
 Identities = 314/320 (98%), Gaps = 2/320 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctgctagctagttattagttgataatagcagtgtgcagcagcaggagaggt 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctgctagctagttattagtt-ataatagcagtgtgcagcagcaggagaggt 263

                                                                       
Query: 65  tttttcatccattaggaaagtaaacaaaacttaggaatgtattggataatcccaacagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 tttttcatccattaggaaagtaaacaaaacttaggaatgtattggataatcccgacagca 323

                                                                       
Query: 125 actcctgcctccacgcttcagttgttcagaaaagacaagttgtcttcatagctatgagga 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 actcctgcctccacgcttcagttgttcaaaaaagacaagttgtcttcatagctatgagga 383

                                                                       
Query: 185 ctgtcataaggctttctgattattcttgtaaatgggctgtattttcttttcttcttcttt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 ctgtcataaggctttctgattattcttgtaaatgggctgtattttcttttcttctttttt 443

                                                                       
Query: 245 ttataattgggtatttatttcatttacatttccaatgctattccaaaagtcccccacacg 304
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tta-aattgggtgtttatttcatttacatttccaatgctattccaaaagtcccccacacg 502

                               
Query: 305 ctcccccacctactccccta 324
           ||||||||||||||||||||
Sbjct: 503 ctcccccacctactccccta 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space:   224910
Effective search space used:   224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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