BAC Information

Click to search

BAC

Clone NameMSMg01-186C18
Chromosome12 (Build37)
Map Location 30,408,054 - 30,574,522
singlet/doubletdoublet
Overlap geneMyt1l
Upstream geneTtc15, Tssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2, Tmem18, LOC100043055
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186C18.T7 (MSMg01no186_c18.b1)MSMg01-186C18.TJ (MSMg01no186_c18.g1)
ACCAG377939AG377940
length754753
length of high quality
(start - end)		320 (46 - 365)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no186_c18.b1 PHD_FILE: MSMg01no186_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:05 2005CHROMAT_FILE: MSMg01no186_c18.g1 PHD_FILE: MSMg01no186_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,408,054 - 30,408,369)(30,574,234 - 30,574,522)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCCTGAGGACACAGTAAGGCAGGTGAGTTACTGACTGTGGAAGG
AAACAGATACAGGTGAGAAGCATGGTCTATTGCAAGCATGGCTCACCAAC
CAGCAGTGTCCTCTCTATTAGTACTCTGGGGTGTTCCCTAGCATCTACAC
GTTGTCCAATAGGGCTGTGCAAGGCATGGGTTGATAGGTATGCTCAGAAG
GTGCACTCTCCATTCTCTAGAGTAGAAACTAATAGTAGGTACAGCATCCT
TAGACATCCATAGAGCCACATTCATTTGTTCAGGAATTTGGGGATAGGAA
TGGCTAGCACACTTGTTTTTCTCCCCCTCCGCCACCTGAAAACAATGAAA
ATATATATTATATTGTCCAACATCAGAGATCTGTTATTCATTGCAATGGG
CTATCAGAAGTCATAGTTTGTGCATCTGGTGCTAGACTCTTTCAAGTTTG
GGGACTCATAGGAGTGTGTCCTGGGTCCCAGGCAGGGTAAGTCCATCAGG
TGAGCAGAAGGAAGAAAAAGAATACAGCTCGTGCTTTCTCTCTCGGGTGA
GAGTCTGTGGAGGGCTGCAGTCTCCCTCCGGTCTCATCCATCTGTGAATA
ATCGTGGTTGGTTATACGAAACTTGCTGGTTCCCTCATTATTATATTGCT
GCCATTATTAATGTCGAATATTCTTGTATTTGTATTCTTTAATATATATT
CACT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGACAAAGTCAGATGACGACTGCA
GATTGTGAAAGCTTCACAGGCCCATGGAGGACAGTGGGAGGAAGAGTAAT
GGATCAAAGTTTCAGAAAGCATCATGGTCCACAAAGATTTGTTAAGATAA
GTTCAAAGGCATTCAGATATGACACTATGACTGGAAGCTACTTCACTGTT
CAAATATAAGCTAATTAAGTCCCAAACTGCATCTTGTCTAGCACGTCTCG
GGGTGTACCCTTTCCCTGTGGGTTGTCTCCAACTTCGTGGTCTTCCAGTA
TTGTTCTGGGCTCTTATTTTCTTGCACCCCGCCCCCACTTGACCAGACAC
CATGACTTGAGTTCCAGCTCTTCCAGTTTACCTCTTGAGCCTGTTTCCTC
AGACCCAAAAAAGAATGGGTTCCTTGTCGCCAGTGTGCAGAAAGCAGCTG
AAGGAGGCATGCAGTTTTGTGGTAGTTTGAATAAGAATGGTGGCCCCCTT
AAACTCACATGTTTGAATGCTACATCAGGGAGTGGTACTACTTGGAAAGG
ATTAGGAGGTTTGGTCCCGCTGCCTCTTTTGTGCCCTCGTGTGTTTATGT
GGGATTTTTTCTTTTTCTCCTATTCCTTCTCTTATTTCTATTCATTTACT
TTTTTATTATCTTTTTTTATTCCTCTATTTTTTCTTCTCTTTTATATTTT
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_c18.b1 MSMg01no186_c18.b1 CHROMAT_FILE:
MSMg01no186_c18.b1 PHD_FILE: MSMg01no186_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:05 2005
         (320 letters)



>mm_chr12_30407850_30408569
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccctgaggacacagtaaggcaggtgagttactgactgtggaaggaaacagata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccctgaggacacagtaaggcaggtgagttactgactgtggaaggaaacagata 264

                                                                       
Query: 65  caggtgagaagcatggtctattgcaagcatggctcaccaaccagcagtgtcctctctatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caggtgagaagcatggtctattgcaagcatggctcaccaaccagcagtgtcctctctatt 324

                                                                       
Query: 125 agtactctggggtgttccctagcatctacacgttgtccaatagggctgtgcaaggcatgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtactctggggtgttccctagcatctacacgttgtccaatagggctgtgcaaggcatgg 384

                                                                       
Query: 185 gttgataggtatgctcagaaggtgcactctccattctctagagtagaaactaatagtagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttgataggtatgctcagaaggtgcactctccattctctagagtagaaactaatagtagg 444

                                                                       
Query: 245 tacagcatccttagacatccatagagccacattcatttgttcaggaatttggggatagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacagcatccttagacatccatagagccacattcatttgttcaggaatttggggatagga 504

                           
Query: 305 atggctagcacacttg 320
           ||||||||||||||||
Sbjct: 505 atggctagcacacttg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no186_c18.g1 MSMg01no186_c18.g1 CHROMAT_FILE:
MSMg01no186_c18.g1 PHD_FILE: MSMg01no186_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:05 2005
         (289 letters)



>mm_chr12_30574034_30574722
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagacaaagtcagatgacgactgcagattgtgaaagcttcacaggcccatggaggacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caagacaaagtcagatgacgactgcagattgtgaaagcttcacaggcccatggaggacag 430

                                                                       
Query: 61  tgggaggaagagtaatggatcaaagtttcagaaagcatcatggtccacaaagatttgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgggaggaagagtaatggatcaaagtttcagaaagcatcatggtccacaaagatttgtta 370

                                                                       
Query: 121 agataagttcaaaggcattcagatatgacactatgactggaagctacttcactgttcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agataagttcaaaggcattcagatatgacactatgactggaagctacttcactgttcaaa 310

                                                                       
Query: 181 tataagctaattaagtcccaaactgcatcttgtctagcacgtctcggggtgtaccctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tataagctaattaagtcccaaactgcatcttgtctagcacgtctcggggtgtaccctttc 250

                                                            
Query: 241 cctgtgggttgtctccaacttcgtggtcttccagtattgttctgggctc 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cctgtgggttgtctccaacttcgtggtcttccagtattgttctgggctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |