CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCCTTCTAGATAATTTACATGAATAAAGTAAAAACAAACAAACA
AAAAAAACCCCCTTAACTTTAGGTAATTTATTCAGTACAACATATTCAGA
GTCAGTTATACATATAGTTTCTTTTTAAAACACACCCATACTATTTCATT
TTTAAATTTTGAAATGCTAACTAAGTCCTGTATTTGCTGTGGATCCATAG
AGTCCAGCAAGGACCCTGAAGGGCTCTGTCCCTCAAAGGGGCTTTGGATT
ACTGATCTGGGTTTGTGGCTGAAGTTCTGGCACTATCATATTCGGGCACT
GAACACATTTATATGTTTTTTGACAACGCACCTTTAGTTTCTTTTTCTCC
TATCTAGGAATGTAGCGGTTTGAGTTCAGCATAATCTGTTGTGATTTAAA
ACTGAATTTGTTTGCTTCTAAATATCTGGCAAGAGTGGCTTGTGAGTCCT
TTTTAGTTCCTAGCGTTGTTTATTCCCCCAGCCTGGTGAAATCCGAGTTG
TTCTATCTTTAATAGTCTCTGCCACTTCTTGGAATAATTCCACAATTCCC
AGGCCTCCTCACTGATAAGTCTATTGGCTACAATATTACAGTGAAGTGCT
CTTTTAACAGAGATTGCTGTTGGGAGCTTTTTCTCTCTTATAAATCTTTG
GCCCCGGGGAGGCTGGGCTTTTCTTCCTGTGTTC

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTATCCCAGCCTCCACTCCAGGAC
GTGCTGTTGCTTGTTCTGTTCGTCTTTGTCATTCGGACTGGGGTCAGAAG
ATTTCTCAAAGTTGTTGTATTTGCATTTCCCTAGTTGCTAGAGAAGACTA
ACATTGTTAGATCTCTCTCAGTCACTTTTTTTTCTTTTCTTTGTTCAAGA
GCAAAGCCCATCTTTGTGAAATATTAAGTGGCTTAGGATATGTGTACTCA
TAGTTGGGTCTTCTATTTTACTCCATTTGTCTATATGCCTGTTTTTGTAC
CAGTACTCTCCTGTCTTTTTACTGGCCCTCTGTAATATATCTTGAGATCT
AGAAATGGTAATCCCTCCACCACTATTTATTTTTCTTGTTCAAACTGTTT
TGGCTATGTGGGGTCTTGGTAATTCCATAAGAATTTTAAGATGTTTTTCT
ATTTCCATGAAGAATGATATAGGTATTTTTGATCGTAACCGCCTCGCCTT
TTCCTTCCCTTACATACATCTTTTTTACACCTTCTTGCATTTTTTTTCGT
TACCTTCTTTTCATTTTCGCTTATCTTCTAGCCCTCTTTCCGTCATCTCT
TTCAATTTTTTCCGTCTTTTTTTTTCTTTTTTTAACATTTTTTTACTTCC
CTTCTCCTTCTTTTTATCTTCACCACACCTCTTTTAC

Query= MSMg01no186_c23.b1 MSMg01no186_c23.b1 CHROMAT_FILE:
MSMg01no186_c23.b1 PHD_FILE: MSMg01no186_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:06 2005
         (381 letters)



>mm_chr12_41852825_41853601
          Length = 777

 Score =  646 bits (334), Expect = 0.0
 Identities = 367/380 (96%), Gaps = 7/380 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctc---tccttctagataatttacatgaataaagtaaaaacaaacaaacaaaaaa 61
           ||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctctagttcttctagataatttacatgaataaagtaaaaacaaacaaacaaaaaa 261

                                                                       
Query: 62  aacccccttaactttaggtaatttattcagtacaacatattcagagtcagttatacatat 121
           |  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 262 a--ccccttaactttaggtaatttattcagtacaacatattcaaagtcagttatacatat 319

                                                                       
Query: 122 agtttctttttaaaacacacccatactatttcatttttaaattttgaaatgctaactaag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtttctttttaaaacacacccatactatttcatttttaaattttgaaatgctaactaag 379

                                                                       
Query: 182 tcctgtatttgctgtggatccatagagtccagcaaggaccctgaagggctctgtccctca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcctgtatttgctgtggatccatagagtccagcaaggaccctgaagggctctgtccctca 439

                                                                       
Query: 242 aaggggctttggattactgatctgggtttgtggctgaagttctggcactatcatattcgg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaggggctttggattactgatctgggtttgtggctgaagttctggcactatcatattcgg 499

                                                                       
Query: 302 gcactgaacacatttatatgttttttgacaacgcacctttagtttctttttctcctatct 361
           |||||||||||||||| | | ||||||| || | ||||||||||||||||||||||||||
Sbjct: 500 gcactgaacacatttaga-gatttttgagaaag-acctttagtttctttttctcctatct 557

                               
Query: 362 aggaatgtagcggtttgagt 381
           ||||||||||||||||||||
Sbjct: 558 aggaatgtagcggtttgagt 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 777
Length adjustment: 9
Effective length of query: 372
Effective length of database: 768
Effective search space:   285696
Effective search space used:   285696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)