BAC Information

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BAC

Clone NameMSMg01-186D03
Chromosome12 (Build37)
Map Location 10,615,193 - 10,615,851
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382567, Nt5c1b, Rdh14
Downstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186D03.T7 (MSMg01no186_d03.b1)MSMg01-186D03.TJ (MSMg01no186_d03.g1)
ACCAG377955AG377956
length740741
length of high quality
(start - end)
491 (46 - 536)659 (75 - 733)
definitionCHROMAT_FILE: MSMg01no186_d03.b1 PHD_FILE: MSMg01no186_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:07 2005CHROMAT_FILE: MSMg01no186_d03.g1 PHD_FILE: MSMg01no186_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTTTTTAATTGCTGATTAGTACTCCACTGTGTAAATGTACCA
CATTTTCTGTATCCATTCCTTTGTTGAGGGACATCTGGGTTCTTTCCAGC
TTCTGGCTATTATAAATAAAGCTGTTATGAACATAGTGGAGCATGTGTCC
TTATAATCAGTTGGAACATCTTCTGGGTATATGCCCAGGAGAGGTATTGC
TGGGTCCTCCAGTAGTACTATGTCCAATTTTATGAGGAACCGCCAGACTG
ATTATCTCAATCTTCTTATATCTTTTTAGGTCTGATTTGTGACTGATTAT
ATGGTCAATTTTGGAGAGGGTACCATGAAGTGCTGAGGAGAAGGTAGATT
CTTTTGATTTAGAATGAACCATTCTATAGATATTTTAAAATCCATTTGGT
CCAAAACATCTGTTAGTTTCACTGTGTCTCTCTTTAGTTTGTGTTTCTTG
ATCTGTCCATTGATGAGAAAGTGGGGTGTTGAAGTTTTTTACATTTATCA
TGTGATCATGTTTGACTGTTCTGATCTATGTTAAATCGTCTTACTTGAAG
TACTCTTTACACTTTGTTGATACTCCCAAATATACATTGCTTTCTACATC
CAAAATTCTTTTTTTTTTTCGTCACTCTCTCATTTCCTCCATCCTTTTCT
ACTCCCCCTAATCTCCACCTCGCCCCTATAATCCCCCCAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATATGCATAAATAATGGTTTATTAA
AACCTTACTTATAAAGTATTCTTCTGTAAGCTTTCCCAGGATGAACCAGG
CTCCCTAAGCCAGATTAACTATGAGACCCTGACCTTGAAGGGCTGAGGAC
CTGACACATATGCTGGTAGCACCTTTTCCTAAGGTTGTGTCCAAGTGTCC
AAATGATGCAAGGGCTACACATTCACATCTCTCCAAATATCCAAATATCC
TTTGTCAGGCAGGTCCACTTTCACCACCACAGCCTTTCTGCTTTCCTCAC
AAAAAGAGAGGAAAGTAGAAAAAATACTAAAGAGATATGGGCTTTACCTT
CTAAGCCACAACTAAAATGACTTGGAAGATGCATGCCTACTTTAGCAATG
GGAGCTTTAAGTCAAGTGGTAGGTTCAGAATAGTGACCCAGCTTCTGCAC
AGAGAGAGTGCAAAGTTGCACATGTACAGTGGATTAGCTGCAGATGTTGG
GCCACAGTCATAGCTGACATGTTCTGATGACATTTGTCTTAATGGAAAAG
TTCAGAGCACCAAGTAGGTGTTTTCAAATAGACAGAGAAGACAACTGAAC
AAGCCAGAGCTTAACCAACATTTCAGAAACAAAACAGCCAGTAAGAAACA
GAGGTAGGAAACAGATGCAGGCAGTTTGGCTTCAAGCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_d03.g1 MSMg01no186_d03.g1 CHROMAT_FILE:
MSMg01no186_d03.g1 PHD_FILE: MSMg01no186_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:07 2005
         (659 letters)



>mm_chr12_10614993_10616051
          Length = 1059

 Score = 1243 bits (643), Expect = 0.0
 Identities = 655/659 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatgcataaataatggtttattaaaaccttacttataaagtattcttctgtaagcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatgcataaataatggtttattaaaaccttacttataaagtattcttctgtaagcttt 260

                                                                       
Query: 61  cccaggatgaaccaggctccctaagccagattaactatgagaccctgaccttgaagggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaggatgaaccaggctccctaagccagattaactatgagaccctgaccttgaagggct 320

                                                                       
Query: 121 gaggacctgacacatatgctggtagcaccttttcctaaggttgtgtccaagtgtccaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggacctgacacatatgctggtagcaccttttcctaaggttgtgtccaagtgtccaaat 380

                                                                       
Query: 181 gatgcaagggctacacattcacatctctccaaatatccaaatatcctttgtcaggcaggt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgcaaggactacacattcacatctctccaaatatccaaatatcctttgtcaggcaggt 440

                                                                       
Query: 241 ccactttcaccaccacagcctttctgctttcctcacaaaaagagaggaaagtagaaaaaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccactgtcaccaccacagcctttctgctttcctcacaaaaagagaggaaagtagaaaaaa 500

                                                                       
Query: 301 tactaaagagatatgggctttaccttctaagccacaactaaaatgacttggaagatgcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactaaagagatatgggctttaccttctaagccacaactaaaatgacttggaagatgcat 560

                                                                       
Query: 361 gcctactttagcaatgggagctttaagtcaagtggtaggttcagaatagtgacccagctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctactttagcaatgggagctttaagtcaagtggtaggttcagaatagtgacccagctt 620

                                                                       
Query: 421 ctgcacagagagagtgcaaagttgcacatgtacagtggattagctgcagatgttgggcca 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcatagagagagtgcaaagttgcacatgtacagtggattagctgcagatgttgggcca 680

                                                                       
Query: 481 cagtcatagctgacatgttctgatgacatttgtcttaatggaaaagttcagagcaccaag 540
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtcataactgacatgttctgatgacatttgtcttaatggaaaagttcagagcaccaag 740

                                                                       
Query: 541 taggtgttttcaaatagacagagaagacaactgaacaagccagagcttaaccaacatttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taggtgttttcaaatagacagagaagacaactgaacaagccagagcttaaccaacatttc 800

                                                                      
Query: 601 agaaacaaaacagccagtaagaaacagaggtaggaaacagatgcaggcagtttggcttc 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agaaacaaaacagccagtaagaaacagaggtaggaaacagatgcaggcagtttggcttc 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)