BAC Information

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BAC

Clone NameMSMg01-187B05
Chromosome12 (Build37)
Map Location 91,847,212 - 91,847,500
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn3, LOC100039498, LOC100039287
Downstream geneDio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187B05.T7 (MSMg01no187_b05.b1)MSMg01-187B05.TJ (MSMg01no187_b05.g1)
ACCAG378557AG378558
length733724
length of high quality
(start - end)
176 (132 - 307)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no187_b05.b1 PHD_FILE: MSMg01no187_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:16 2005CHROMAT_FILE: MSMg01no187_b05.g1 PHD_FILE: MSMg01no187_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTATAGTTTACCTTCATTCTTCTTTCTTTTCTTAGATATTTTCT
TCATTTACATTTCAAATGCTTTTCCCCAAGTCCCCTATACCCTCCCCTCG
CCCTGATCCCAATCCCACCCACTCCTGCTTCCTGGCCCTGGCATTCCCCT
GTACTGGGGCATATGATCTTCACAAGATCAAGGGCCTCTCTTCCCATTGA
TGCCTGACTAGGCCATCCTGCAACTAGAGACACATCCTGAGTGAGGTAAC
TCAGTCACAAAAAAGCACACATGATATTTTCTCACTGATAAGTGGATATC
ACCCCACAAATTTGTTTTATTCACCATCCCATCTCTCTAACACTTGAAAC
TCAAGAAGAACGAACCCCCCCCCCATACAAAAAACGAATCATATACGATT
TGTCGGACCATCTTTCACCTGACCCCCCTGGGTATCCACTCCTCACCCTT
TTTCCCCACTTTTACCCTATTCTTCCCCGCCCTTCCTACTTTTGCTCACC
GTCATCCTGATTTACCTATTTGTTTTTACCTTTTCCCTGCTTTCCGCCCT
CCCCCCACTTCCTTTTCCCCCCCCCTTCTCTTTTCTTCCCCCTTTCCCCC
CTCCCGCTTTCCCCCCCCCTCCCCCCCTTTTTTCCCCCTCCCCCTCCCTA
TTTTCCCTTTTCCCCCCTCTCTCCCTTTTTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATACTAGATACTTGCAAACATTC
AACTGTAAATATGAGGAAAGGGACAAAGAAATACTGAATCCTGCCAATAA
GAAACATGCATTTGTTAAAACCTCACTCTATGTCTGCCACTGGGTTATTA
TTACTATTTCACAGTAAATAATTCATGTTTCACTACTTTCCCTAACACTC
AGTACTTCTCTACCCTGTCTCTAAAGTACCCCCTTTATGGCAGAGCAGCT
GCTTTTCCTCCATGTGACAAAGGTCCACGTAGGCTTAACTCATACAGGAT
GGCTTTCTCTTCTCCATTATCTTCCACCCACCTGCTGAGACTGGCAGCTT
GCCCGGCTTGGAGATATTCCCCCTTTAATTCTTATAAAACCATCCTGAAG
TTTCAAAAGATAATAATTCATGATTCCTATAAAGTGACCAATATGGCCAA
GTTGTATCTGCAAGATTGCCTGTTTCAGCCACTCTTCGTGTATTAAAACA
TGCGGAGTTGTTTGTGCTTGCTCCAAGTCTACAGAATCACAGGCTGCGAG
GGTGTTCGAATGTGAGATGTAACTGAATAACAGTTCTCAACAGTCCAGTA
GTTATCCAGCAAAACTTCCACAGATGTGCACAAGAGGGGCCTGTGCTGGT
TAACAAGCATTTTCTGACTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_b05.g1 MSMg01no187_b05.g1 CHROMAT_FILE:
MSMg01no187_b05.g1 PHD_FILE: MSMg01no187_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:16 2005
         (289 letters)



>mm_chr12_91847012_91847700
          Length = 689

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catactagatacttgcaaacattcaactgtaaatatgaggaaagggacaaagaaatactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catactagatacttgcaaacattcaactgtaaatatgaggaaagggacaaagaaatactg 260

                                                                       
Query: 61  aatcctgccaataagaaacatgcatttgttaaaacctcactctatgtctgccactgggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcctgccaataagaaacatgcatttgttaaaacctcactctatgtctgccactgggtt 320

                                                                       
Query: 121 attattactatttcacagtaaataattcatgtttcactactttccctaacactcagtact 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgttactatttcacagtaaataattcatgtttcactactttccctaacactcagtact 380

                                                                       
Query: 181 tctctaccctgtctctaaagtaccccctttatggcagagcagctgcttttcctccatgtg 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctaccctgtctcgaaagtaccccctttatggcagagcagctgcttttcctccatgtg 440

                                                            
Query: 241 acaaaggtccacgtaggcttaactcatacaggatggctttctcttctcc 289
           |||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 441 acaaaggtccacataggcttaactcatacagtatggctttctcttctcc 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)