BAC Information

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BAC

Clone NameMSMg01-187P07
Chromosome12 (Build37)
Map Location 6,348,370 - 6,348,654
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl29, 2810032G03Rik, LOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049
Downstream geneLOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187P07.T7 (MSMg01no187_p07.b1)MSMg01-187P07.TJ (MSMg01no187_p07.g1)
ACCAG379133AG379134
length735758
length of high quality
(start - end)
315 (36 - 350)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no187_p07.b1 PHD_FILE: MSMg01no187_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:25 2005CHROMAT_FILE: MSMg01no187_p07.g1 PHD_FILE: MSMg01no187_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCA
GGTAGGAGTACTGTGTTCTGAAGATTCCAAGTAGTCTTGGTTTCTGTTGA
TACGATACTTGTGTTTGCCTATCACCATCTTGTAATCTGTGTTGTTAGTT
GTTCTTGCTGTCTCTGGCTAGAGTTTGTTCCTCCTGTGAGTCTGTAAGCC
TCTGTCAGCACTCCTAGGAGACCAGCTCTCTCCTGGCAAGACCAGTTCAC
AGAGGACTGAGGATCAGTAGTACCTCCTGGGTGCAGATGTAGGCCCATAG
GACCCTGTCCCAGCTGATTGTGGCTTCTGAGGCCTGTGAGCTCCTAAGTG
TTATTTCCTTACACACCAACTGGAGAGAAAATGTTGATCTTCCCTGAGTC
CTCCCCTCACAGTACTCACTGTATTCAAGCTCTCCCCTGGCAGGTAAAGA
TCACAGATTACTGTGGAACAGCCCTACCTCCTGGGTACTTATGTATTTTT
ATGGATTTTGCCCCATTCGTTCTGTGCCTTCTGTGTTTTGTGCTCCCCTT
ATTGGTTTCACCTTTTATTTTTCCCACATAGAATCTTTCCACCATTCCTG
CCTATTTCTTTTTCCCCCTCCGTTTCCTATTATATCCCCTTTTCCTTCCA
CCCCTTTTTACCTCCCCCTTTACCCAATTTTTTACCCTTTCCCTTCCCAT
TTTAACGTTTTCTCCATTTTTCCCCTCTTTCCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAGACTTGTATATTTAAGTTTG
TGCAAAATGCTGCCATAGCTTCATAAATATGGACCATAAATACTAGAACA
GAGACCATTGAAATAGCCATATGTCTAAAATATTATTGTATTTAAAAGCC
ATACATTTATTAGCCATGGAGTCACAAACTTTCTCATGTGAAAGATTATC
TGAACGGCCTAGTTCTCAAAGGCATGGGGCAAGGGCTGTTTGATTGATGG
GTACCAGGTTAAGAACAGACTTTAATGTCCTGGTTAAAATTTGTTACTTT
ATTTTTGAGTCTTTCTACTTCTCCCCACCATTCGCCTAGTTACATACTTA
TAATGCCCGACTCATGCCCCCCCATTAGGCATAAAAGAGTCTAGGCTCTT
TTTATAACTGAACAATATCTGAGATATCTTATAGAGAGGACAACTCAGGC
TCTCACATCCAACCTGAAAGGAGCAATTGTGTGTCACTAAGCTCTTTTTT
TATAAAGTAGATTAACAGGGTTTTTCAAACTATGATGACCTCTTATGTCC
CATGCCCATATTTTCTTCGTTTCTGTGTTACGCATTTACACGTTTTTTCC
CCTTCTTTTCATCCTTCTCCCCCCCCAGGCTATCCTTCATAACCATATTT
GACACATACCTATCCGCTTTTAATGAGCGTTAAAATTAATCTCCACTTTT
TCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_p07.g1 MSMg01no187_p07.g1 CHROMAT_FILE:
MSMg01no187_p07.g1 PHD_FILE: MSMg01no187_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:26 2005
         (287 letters)



>mm_chr12_6348170_6348856
          Length = 687

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagacttgtatatttaagtttgtgcaaaatgctgccatagcttcataaatatggacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagacttgtatatttaagtttgtgcaaaatgctgccatagcttcataaatatggacca 260

                                                                       
Query: 61  taaatactagaacagagaccattgaaatagccatatgtctaaaatattattgtatttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatactagaacagagaccattgaaatagccatatgtctaaaatattattgtatttaaa 320

                                                                       
Query: 121 agccatacatttattagccatggagtcacaaactttctcatgtgaaagattatctgaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccatacatttattagccatggagtcacaaactttctcatgtgaaagattatctgaacg 380

                                                                       
Query: 181 gcctagttctcaaaggcatggggcaagggctgtttgattgatgggtaccaggttaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctagttctcaaaggcatggggcaagggctgtttgattgatgggtaccaggttaagaac 440

                                                        
Query: 241 agactttaatgtcctggttaaaatttgttactttatttttgagtc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactttaatgtcctggttaaaatttgttactttatttttgagtc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)