BAC Information

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BAC

Clone NameMSMg01-188J13
Chromosome12 (Build37)
Map Location 105,805,920 - 105,806,231
singlet/doubletsinglet
Overlap genenone
Upstream gene8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
Downstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188J13.T7 (MSMg01no188_j13.b1)MSMg01-188J13.TJ (MSMg01no188_j13.g1)
ACCAG379570AG379571
length750736
length of high quality
(start - end)
316 (57 - 372)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no188_j13.b1 PHD_FILE: MSMg01no188_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:17 2005CHROMAT_FILE: MSMg01no188_j13.g1 PHD_FILE: MSMg01no188_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAAACCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCACAGCCCAGGCTCACAGGCAAATCAGAGATGAC
GGCTCGCGCCCCAGGGCTCTGTCTGCCTGGTAATAAATACTTTCCTTTTG
TCACGATTCAGGGGAGAGGGAGAGCGATATGCGAACCCTATCAAATATTC
CAAGGTGGCGGCAAGTCAGCCGTGACCGGGTGCGGCCTTCCATCGGTCAG
GAGGCACGACCTGCAGGCACTCCAGATGCAAGAGAGCCCGTCCTCGTGTG
GCCTCCTGTGCTTGGCCTGACTGGTTAAAGTTGGCTTGTTCCTCGTCATC
CTCTAGTGACAAGCAGCTGGCTTGTCTTTCGCCCCCCCGCCGATACTGGA
CACATCATCCCTATTGAACTCCTCCCTAGGCCGAACCTTATCTCCTACGT
GATCCAAGGCCAACCTGGAGGCTTGAAAAGGAGACCCCTAAGGTCTTTAT
CAAGCTTGGCCCAGACCCCCTCTCTCTCCCTCGTATACTCCTTAAAGACC
CCCTTCCTCTCACACCCCACCACGGGACTCAACAAAATCGCTGAAGACCC
ATGCCAGCTTCATGGTCCGCGTCAAATCAGCCTCCTTCTTAACTGCCTGC
GAGCACGGCTCTTATCTTACGACGCGATCATCCTACCCTGCCGTTTTCGT
GTCCAACTCCCTCAGTAGGGCCTGCCCTTCATTACTGTCTTCCAGTCTCT

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGGGTAGATCAGGCTAGTCCCAA
ACTCACAGAGATCCTTCTGCCTCTGTCTCCTTAATACTGGGATAAAGGAG
GACTAAATGCATGGGTCACTGTGTCCAGCACTTCATTACAATCTGTAAGT
GGTCTGAAGTATTTGCCTGTAAGAATAAACGCAATAACAAAAGACGAAAA
AGCAAAGGGCGTGACGTGGGCCTGGGGAGATGGCTCACACTTGGTACAAG
GTTTGCCTGGAGAGCATGAAGGCCCAAATGGTTTCCAGAATTCAGAGCAA
AAGGCGGGGGTATATTTTTTAGCTTGCCCCCCCAGGCCCAGGGAGGAGGA
GGCAGGCACATCTCTGGGTCTCCTTGATCAGACAGTCTGGCTTTCTTGGC
TAAGTTCCAGTCAGTGAGAGACATAATACAAGAGAGTGAGGTGGGCAGTG
TCTGAGGTTATTCTCTGGCCTCCATACATAGACACACAAGCACCCCCCCA
CACATACTCATGTGCATTCCACATGAACACACAGACATGCACAGACACAC
ACACACACACTTGCATGCACACATGCATGTGTGCACACACAGGACTTAAT
TAATAAAGAATTATGAACAGTACCAATCGCGAGTAGTACTCAACACTTAT
TCCTAAGCAAAACCCAACCACTTCATACCTAGCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_j13.b1 MSMg01no188_j13.b1 CHROMAT_FILE:
MSMg01no188_j13.b1 PHD_FILE: MSMg01no188_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:17 2005
         (316 letters)



>mm_chr12_105805716_105806431
          Length = 716

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacagcccaggctcacaggcaaatcagagatgacggctcgcgccccagggctct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagcccaggctcacaggcaaatcagagatgacggctcgcgccccagggctct 264

                                                                       
Query: 65  gtctgcctggtaataaatactttccttttgtcacgattcaggggagagggagagcgatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtctgcctggtaataaatactttccttttgtcacgattcaggggagagggagagcgatat 324

                                                                       
Query: 125 gcgaaccctatcaaatattccaaggtggcggcaagtcagccgtgaccgggtgcggccttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcgaaccctatcaaatattccaaggtggcggcaagtcagccgtgaccgggtgcggccttc 384

                                                                       
Query: 185 catcggtcaggaggcacgacctgcaggcactccagatgcaagagagcccgtcctcgtgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catcggtcaggaggcacgacctgcaggcactccagatgcaagagagcccgtcctcgtgtg 444

                                                                       
Query: 245 gcctcctgtgcttggcctgactggttaaagttggcttgttcctcgtcatcctctagtgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcctcctgtgcttggcctgactggttaaagttggcttgttcctcgtcatcctctagtgac 504

                       
Query: 305 aagcagctggct 316
           ||||||||||||
Sbjct: 505 aagcagctggct 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)