BAC Information

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BAC

Clone NameMSMg01-189B19
Chromosome12 (Build37)
Map Location 59,321,528 - 59,321,835
singlet/doubletsinglet
Overlap genenone
Upstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1
Downstream geneClec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189B19.T7 (MSMg01no189_b19.b1)MSMg01-189B19.TJ (MSMg01no189_b19.g1)
ACCAG379909AG379910
length750737
length of high quality
(start - end)
315 (45 - 359)661 (77 - 737)
definitionCHROMAT_FILE: MSMg01no189_b19.b1 PHD_FILE: MSMg01no189_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:00 2005CHROMAT_FILE: MSMg01no189_b19.g1 PHD_FILE: MSMg01no189_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGCTCATGGCACAACAATATAGCAGGAAAGCTAACCAATGGGGT
AGTCTTTGTCCTACCTCTCACATAGATGATGCCTATGAAACTGGGTGGCT
CCTATGTCCCTGTGGATTTGTGTCACATCTGAGTCACACTGAGTTTGGAG
ACATCACCCTTCTATGACATGGAGTGGTCAAGGTTTCTCTTTGTCCTTGA
AGGAGACATAACTGCTTGCAACGAAAACAACCTTGAGAAATAATCTAGGA
AATTGGGCAGTTAAGCAAAACTTCATATTCTTAGCATATTCATTCGGCAG
AATGAATATATTTTACGAAGCTCCTAGAGCCGGGGCTGACAAAATGAAAT
CAGTCAGTACAGCTAGAGAGACTTACATTTGAGTGTGGGAGGGTAATATG
CTCCACACTCTGTGAGAACAAAGGATGTTGAGTCTTAAAACGAATCAATA
TAGCAGAAGTCAAAGATTAAAGCGGACACTGAAAAAAATTTCAGGGAATT
GGGAATCAAGTCACCCTGAGGCCAGATCTTCTCAAGAATGTTTACTCTTG
CGTGCTAATTGAGTTTTCACTCATTAACAACTGAAAGTCTTTGACAAGTT
TGGCATTTGGCATGCATTGTCTCATCACAACAGCCCTGCAGAAGAGGATG
CCATTAGTTTGCCCTTATAGATGAGGGTAATAAGCATCATGCAGATTAGN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTGAAGAATCTCGAATGCCT
GAGAAGCACTTAAAGAAATGTTCAACCCCCCTAGTCAACAGGGAATTGCA
AATCAAAACAACATTGGGATTCCATCACACACCAATCAGAATGGCGAAGA
TCAAAAACTCAGGTGACAGCACATGTTGATGAGGAACACTCCTCCATTGC
TGCTGGGACTGCAAGCCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAACA
CTTTGGAAATCAGTCTGGCAGTTCCTCAGGAAATTGGAAATAGTTCTACC
TGAGGAACCAACTATATCATTCCTGGGCATATACCCAAATGATGTTCCAA
AATGTAATAAGGACACATGTTCCACTATGTTCATAGCAGCCTTATTTATA
ATAATCAGAAGCTGGAAACAACCATGATGTCCCTCAACAGAAAAATGGAT
ATGGAAAACGTGGTACATTTACACAATTAATTACTACTCAGAGATTAAAA
ATGACTTCATGAAACTTGCAGGCAAATGAATGGAACTAAAAAATATCATT
CTGAGTGACGTAACCCAGACACAAAAGAACACTCATGGCATGTACTCACT
GATAAGTGGATATTAGCACAAAAGCTCTCAATGCCCATAATACAACCCAC
AGACCATATGGAGCACAGAAAGAAGGAAGACCAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_b19.b1 MSMg01no189_b19.b1 CHROMAT_FILE:
MSMg01no189_b19.b1 PHD_FILE: MSMg01no189_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:00 2005
         (315 letters)



>mm_chr12_59321518_59322233
          Length = 716

 Score =  507 bits (262), Expect = e-148
 Identities = 298/312 (95%), Gaps = 5/312 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgctcatggcacaacaatatagcaggaaagctaaccaatggggtagtcttt 63
           |||||||||||||||||  ||||||||||||  |||||||||||||||| |||| |||||
Sbjct: 318 ggaattcactgctcatgatacaacaatatagtgggaaagctaaccaatgcggtaatcttt 259

                                                                       
Query: 64  gtcctacctctcacatagatgatgcc-tatgaaactgggtggctcctatgtccctgtgga 122
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 258 gtcctacctctcacatagatgatgccttatgaaactgggtggctcctatgtccctgtgga 199

                                                                       
Query: 123 tttgtgtcacatctgagtcacactgagtttggagacatcacccttctatgacatggagtg 182
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 198 tttgtgtcacatctgagtcacactgagtttggagacatcactcttctatgacaaggagtg 139

                                                                       
Query: 183 gtcaaggtttctctttgtccttgaaggagacataactgcttgcaacgaaaacaaccttga 242
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 138 gtcaaggtttctctttgtccttgaaggagacataactgcttgctacgaaaacaaccttga 79

                                                                       
Query: 243 gaaataatctaggaaattgggcagttaagcaaaacttcatattcttagcatattcattcg 302
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 78  gaaataatctaggaaattgggcagtt----aaaacttcatattcttagcatattcattcg 23

                       
Query: 303 gcagaatgaata 314
           ||||||||||||
Sbjct: 22  gcagaatgaata 11


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space:   216342
Effective search space used:   216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)