BAC Information

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BAC

Clone NameMSMg01-189D01
Chromosome12 (Build37)
Map Location 32,890,597 - 32,890,883
singlet/doubletsinglet
Overlap genePik3cg
Upstream geneLOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
Downstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189D01.T7 (MSMg01no189_d01.b1)MSMg01-189D01.TJ (MSMg01no189_d01.g1)
ACCAG379959AG379960
length710715
length of high quality
(start - end)
314 (45 - 358)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no189_d01.b1 PHD_FILE: MSMg01no189_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:06 2005CHROMAT_FILE: MSMg01no189_d01.g1 PHD_FILE: MSMg01no189_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTGTC
AAATGCTTTCTCCATCTAATGAGATGATCATGTGGTTTTTGTCCCTGAGT
TTGTTTATGTACTGGATTACATTGATGGATTTCCATATATTAAACTCTAT
TGAGGATTTTTGCATCGATATTCATAAAGAAAATTGGTCTGAAGTTCTCT
ATCTTTGTTGGGTCTTTTTGTGGTTTAGGTATCAGAGTAATTGTGGCTTC
ATAGAATGAGTTGGGTAGAGTACCTTCTGTTTCTATTTTGTGGAATAGTT
TGTGAAGAATTGGTATTACATCTTCTTTGAAAGTCTGATAGAATGCTGCA
CTAAACCCATCTGGTCCAGGGCTATTTTTGGTTGGGAGACTATTAATGAC
TGCTTCTATTTCTTTAGGGGATATAGGACTGTTTAGATCATTAACCTGAT
CTTGATTTAGCTTTGGTACCTGGTATCTGTCTAGAAACTTGTCCATTTCA
TCCAGGTTTCCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATGTGAT
GGTGTTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCATTTC
TGATTTTGTTAATTAGAATGCTTTCCCTGTGCCCTCTAGTGAGTCTGGCT
AACGGTTTAC
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGCAGCCACACTGGTCTCCAGTG
CGCGCAGCCACACCTGAGCTTTCATCTGTTCCACATTGCCATGGCCAGCC
ACATGCAGCAGCGCTGTTTCAGGAGTCTTGCTGATGCGCTGGCTGGTGGG
CAGTACGAACTCAATGGGGATGAGCTCCATGGAAGACAGGCTACCTGCTG
CGCTGCGTGGCTTCATCCTCCGACGCCTGCGGAGGTTGTCCTCTCTTAGA
ACCACCGGTTGTTCATAGTTCTCCAGCTCCATGCCCTATGCGACCTGGGA
GTGGAGAAACAGAGCTTTGTCAAGAGACACTGCTTCCTGCACATTCCTGT
ATGATGGCAGAGAGAAGGTGTGGTGGGCTGATGTGAGCACAAGGCCTGGA
GGGACCAAGAAAGATGGAGGCAGCGCTGACTTTAGCAGTGCTGGCCAGAA
CATGAATCCCTGCCAGCCACTTACTGTTTGAGCGATGTAGCCTACTTATC
CTCTGAGCCTGATCCCTATTCGCCCATTTGATCATTTACAACTTTAATAT
GTAGGTTAAAGTTAAATAAGGCCGTGCACCTTTTTTAAAAATCATGTTGA
CTTCGTTCCTTCAGTCCTTGTTAGTGCGTATGCGCGTGCGTGCCGATGAT
GTTTTATTTTAACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_d01.g1 MSMg01no189_d01.g1 CHROMAT_FILE:
MSMg01no189_d01.g1 PHD_FILE: MSMg01no189_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:06 2005
         (287 letters)



>mm_chr12_32890397_32891083
          Length = 687

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgcagccacactggtctccagtgcgcgcagccacacctgagctttcatctgttccacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgcagccacactggtctccagtgcgcgcagccacacctgagctttcatctgttccacatt 260

                                                                       
Query: 61  gccatggccagccacatgcagcagcgctgtttcaggagtcttgctgatgcgctggctggt 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gccatggccagccacatgcagcagcgctgtttctggagtcttgctgatgcgctggctggt 320

                                                                       
Query: 121 gggcagtacgaactcaatggggatgagctccatggaagacaggctacctgctgcgctgcg 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gggcagtacgaactcaatggggatgagctccatggaagacaggctgcctgctgcgctgcg 380

                                                                       
Query: 181 tggcttcatcctccgacgcctgcggaggttgtcctctcttagaaccaccggttgttcata 240
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcttcatcctccggcgccggcggaggttgtcctctcttagaaccaccggttgttcata 440

                                                          
Query: 241 gttctccagctccatgccctatgcgacctgggagtggagaaacagag 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctccagctccatgccctatgcgacctgggagtggagaaacagag 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)