BAC Information

Click to search

BAC

Clone NameMSMg01-190I12
Chromosome12 (Build37)
Map Location 66,426,043 - 66,426,345
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190I12.T7 (MSMg01no190_i12.b1)MSMg01-190I12.TJ (MSMg01no190_i12.g1)
ACCAG380846AG380847
length711754
length of high quality
(start - end)
309 (45 - 353)279 (77 - 355)
definitionCHROMAT_FILE: MSMg01no190_i12.b1 PHD_FILE: MSMg01no190_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:48 2005CHROMAT_FILE: MSMg01no190_i12.g1 PHD_FILE: MSMg01no190_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGGATCTCATCTTGTCTCTTCTGCTACTGTGTGCTTTAAAGTTT
TGGCTGGATACTGTGTCATAAGCTATCAAAAGAAGAAGAAAGCAGAAAGA
GAACCGCTCATCTAGCTTTGATAAACAAGAGCACTTCACTTTCCTTTGAT
GGTATGGACAGCTAGTTTTTGGGAAGCTTAGAAAATGGGCATTGAGTGAC
ACAGATTAAAAGGCATACATGAATGTGCTAAATCTCCACTGTTGTCTGTG
CCTTAGTTTCTATGAGTATGCTGGTGGTATAGCTTGATGTACTCTTCATG
GAAATTCTAGCTCCACCCACTCCCCGAACCCCTCACTAAATCACTGCCTT
TATCTTTTTTTTTATTATTTTTATTAGGTATTTTCCTCATTTACATTTCC
AATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCACTCCCCTACCCAC
CCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAG
TTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCAACTAGGCCATC
TTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTT
CATAATGCTGTTCCCCCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGG
ACTTTCTCTAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGAAAGAGTTAGTTAATTAAC
CTGGACCCTTGCAACTCTCAGAGTCTGAACTACAAACCAAAGAACATACA
CAGACTGGACCTAGGCTCCCTGCAGATATGTAGCAGATATACAGCTTGGC
CTTCATGTGGGTCCTGAACAACTGAAGCAGGGGCTATCCTAAAAGGGGTT
GCCTATGTGGGATATGTTCTTCTACCTGGGCTGACTGTCTGGCTTCAATG
GGAGAGGAAGCACCTAGTCTTGCTGGTACTTGAAGTGCCAGAATGGGGGA
TATTTTTTTTTTCCCACCCCCCCCCCAGAGAAGAAGGGAGGTGGAAAGGA
GGGAGATTGTGAGAAAAAAAAAAAAAAAAATCCGGGGGGGGGGGGGGGGC
CCACTTATCTTTTTTTCCATACCCCCTCCATCCACCTGTAACCTTTTTTT
TTTCTTTCCATGTACTTTCCTACTTCAGCTTCACACCTCCCATATTTCAT
TTCATCTCTACCACATTTTAAACATATTAAATAAACACCCATTAGTCTCC
AGATATTCTCCTTTCGCCACTACTCAAAGAAATTTTTTTATTTTTAATGA
CGCCCCCTCCCTATTTTTTTTTTATTTTTTGCCCCTGTCCTTCCCCCTCT
TCTTTTTTTTTTCTTGCTCTCTATTCTCCTTCCTTTTTTTTTTTCGTCTC
CTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_i12.b1 MSMg01no190_i12.b1 CHROMAT_FILE:
MSMg01no190_i12.b1 PHD_FILE: MSMg01no190_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:48 2005
         (309 letters)



>mm_chr12_66425840_66426545
          Length = 706

 Score =  561 bits (290), Expect = e-164
 Identities = 301/306 (98%), Gaps = 3/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaaggatctcatcttgtctcttctgctactgtgtgctttaaagttttggctgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 ggaattccaaggatctcatcttgtctcttctgctactgtgtgctttaaagtattggctgg 447

                                                                       
Query: 64  atactgtgtcataagctatcaaaagaagaagaaagcagaaagagaaccgctcatctagct 123
           ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 446 atactgtgtcataagctatcaa---aagaagaaagcagaaagagaaccgctcatctagct 390

                                                                       
Query: 124 ttgataaacaagagcacttcactttcctttgatggtatggacagctagtttttgggaagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttgataaacaagagcacttcactttcctttgatggtatggacagctagtttttgggaagc 330

                                                                       
Query: 184 ttagaaaatgggcattgagtgacacagattaaaaggcatacatgaatgtgctaaatctcc 243
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 329 ttagaaaatgggcattgagtgacacagattaaaaggtatacatgaatgtgctaaatctcc 270

                                                                       
Query: 244 actgttgtctgtgccttagtttctatgagtatgctggtggtatagcttgatgtactcttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 actgttgtctgtgccttagtttctatgagtatgctggtggtatagcttgatgtactcttc 210

                 
Query: 304 atggaa 309
           ||||||
Sbjct: 209 atggaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 706
Length adjustment: 9
Effective length of query: 300
Effective length of database: 697
Effective search space:   209100
Effective search space used:   209100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)