BAC Information

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BAC

Clone NameMSMg01-190L18
Chromosome12 (Build37)
Map Location 95,843,177 - 95,843,479
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190L18.T7 (MSMg01no190_l18.b1)MSMg01-190L18.TJ (MSMg01no190_l18.g1)
ACCAG380973AG380974
length831983
length of high quality
(start - end)
278 (96 - 373)---
definitionCHROMAT_FILE: MSMg01no190_l18.b1 PHD_FILE: MSMg01no190_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:06 2005CHROMAT_FILE: MSMg01no190_l18.g1 PHD_FILE: MSMg01no190_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGAGGCGCCGCGACAAATTAAAAAAAAAAATTAAAACCCTTNNNNNTCTT
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGCAATCTGTTAATAACTGAGCTTGCTGCCCTTGAAAACTGAG
CAAAGACTTCCCTCATTCAGAATCATAGAATAATTAATCAATAAATCCTA
ATATTATACCCACAGAGAGAGAGGGAGAGGGAAAGGGAGAGAGCAAAAAC
TACCCTTGCTAACTCATCTGCCCATTATCTTGAAGAGGAATCTATTTTTG
CACACTAGGTGATTTATGAAGCATACATTGTCATTTCAGACCACAAATGT
CAAAAAGTTAAAGGAGGGTAGCCAATTAAAAGCATTATGAATAATCCCGC
CTCACTTTCAAACCTTTTTTTGTTTCCCCCCCCCCCGCCAATTCCTACAT
TTTTATCCCTTTTGTTAATTCCTCATGACGATGAACAAACAGACACTTAT
TAGGAGTGATGTCATTTAATCAGTTTGGGTAGAATCTACATAGATCAGTT
CAGAGTTGAATGACATTTGTTCATCTCTGCTAGCTAAATTATAAAGTCTT
TTTCTTTTTCTGACTTTATCCAAATCTGAATAATTAACTAATGTTCTTAA
GCCCTATTTCCCCCTATTCTTTCTACTCACACTTAATTATCGCCGCCAAA
ATAACAAATTAACTCGCTGCAATGATTCGTTCTAATGTGCCCTCCTGGTC
CTATTCAAATAAATCCGTCGCCGCTTTTGCCGATTCCTCCCCCGCCGATT
AATTCCTCGATAAAAAGCATCCACTCACCAT
ATACCCCCCTTATAAATACCGCAAACCCACCCCCCATCCCCCCCACTNTT
TTACTATGATATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGATGATCGTCCTACT
CTTGCGACGCGCTCGACTCGACCAGCGAGCAACGACGTCTGTCTACAGGA
TCCTTCTGCACACGATTTATCTGGGAGAGCTTCGATACGCAGAGGACGAA
AAGACTTTTATGGCCAGGAGCTCGCAGCTGCCTTTTATAGGCCTTAGGTA
GAGGCGTGTCTCACACCCTGCACGGGTTATGCTCTAGAGCCTCATTTTGC
ATGCATCCTCATACAGATTGGTATATTCTCTACTCAGAACCTTACAGATG
AGTCATTATCAGTACCTCAGTGTGCCTCGCCTCATAATCCGATTTGCATT
ACTCTTTGATAATTTCCCCCCCCCCCCCCCCACTTATTAGTGTCATCTAT
TTGGAACGATCTTACAATCTTGATTGCTTTAAAAAAAAAAAAAAACCACC
ACTTGATTCGGTTGGGGCCAATGCAACGGACGCCACTTCATTGTATTTCC
GAACAAACAACATTTACTTGCATTATGATATAACTTGCCGGTTTGTCTTT
GTCCTACCACCCATATCGCCCTGTATTGTTTCAGTCCTAATTTTCCCAGG
GTACGGCACCCTTTTTATCGCCCATATATGAAGCTTCTTTATTCTATTTG
TTTACTTACTCGTTTCGTTCTTCACCTTTATAATTTGTTTGCCCTGTGCA
TCTCCCGATTTCCGTTATCATAATCATTTTTCCCCCTTCCTTGATTTGTT
CCCACTTTTAATGGTTTCACGATTGTTTGCACCACCTCTCACCCAATTTG
TTTTATTGTGTTATTCTTATTTCGACCCGCCTTTATTATTCGTATATATT
ACTAAACACTCATCGCCTTCTACATCACTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_l18.b1 MSMg01no190_l18.b1 CHROMAT_FILE:
MSMg01no190_l18.b1 PHD_FILE: MSMg01no190_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:06 2005
         (278 letters)



>mm_chr12_95843166_95843843
          Length = 678

 Score =  381 bits (197), Expect = e-110
 Identities = 263/307 (85%), Gaps = 36/307 (11%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgcaatctgttaataactgagcttgctgcccttgaaaactgagcaaagact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggaattctttgcaatctgttaataactgagcttgctgcccttgaaaactgagcaaagact 255

                                                                       
Query: 64  tccctcattcagaatcatagaataattaatcaataaatcctaatattatacccacagaga 123
           ||||||||||||||||||||||||||| |||||||||||||||||||||    |||||||
Sbjct: 254 tccctcattcagaatcatagaataatttatcaataaatcctaatattat----acagaga 199

                                                                       
Query: 124 gagagggagagggaaag-------------------------------g-gagagagcaa 151
           ||||| ||||| |||||                               | ||||||||||
Sbjct: 198 gagagagagagagaaagagagagagagagtgagagagagagagagagagagagagagcaa 139

                                                                       
Query: 152 aaactacccttgctaactcatctgcccattatcttgaagaggaatctatttttgcacact 211
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aagctactcttgctaactcatctgcccattatcttgaagaggaatctatttttgcacact 79

                                                                       
Query: 212 aggtgatttatgaagcatacattgtcatttcagaccacaaatgtcaaaaagttaaaggag 271
           |||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 78  aggtgatttacgaagcatatgttgtcatttcagaccacaaatgtcaaaaagttaaaggag 19

                  
Query: 272 ggtagcc 278
           |||||||
Sbjct: 18  ggtagcc 12


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)