BAC Information

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BAC

Clone NameMSMg01-191F01
Chromosome12 (Build37)
Map Location 99,543,781 - 99,640,048
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191F01.T7 (MSMg01no191_f01.b1)MSMg01-191F01.TJ (MSMg01no191_f01.g1)
ACCAG381379AG381380
length826737
length of high quality
(start - end)
236 (108 - 343)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no191_f01.b1 PHD_FILE: MSMg01no191_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:52 2005CHROMAT_FILE: MSMg01no191_f01.g1 PHD_FILE: MSMg01no191_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,543,781 - 99,544,009)(99,639,815 - 99,640,048)
sequence
TTTTAAATTTGTTTTTTTTTCTTTTTTTTTCCTTCTCTCTTAAGNGGGGA
NNNNNNGGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCACTGTGGAGTAGGGACTGTTTTCAGACTCTGTT
GTGGTGTCTCCTCTATTTCTTTAGTAGGTAAATCCTGGTAACTTATCTTT
TAGTTCAAAAAACTTGAAGAATAGTATTTGAACCTTATGAAAAGTTCTAA
ATACTATATAGAGACTGCCGCAGACCCTCTTGGCCCCTGTGTCTGCGTAG
GAAAGAGTCTCTAGAGTAGATGGGCAAGATTAGGATGTAGCGACAGACAG
CCAAACACACAAGAGAGGCGTTTAATCTGAATGTAATTTTCCAGTCGAGC
ATCAGACTTTTATAATTTTTTTTTTTTTGCCCCCCCCCCCCCTTTTGAAT
TTTTCCAGGTGTAAAAGGAGTGATTTCATAAGGAAACAAATAAATGTATA
ATTCTTCTAGAGTAGTACACATGTAATGGCGAGTGACTACTTATGGCAAT
TTGTAGGTGTCCGCATTAATGTTTACTTTATCAGCTCACCTCCTTCTGCC
TCCGTTTCAGCCCTCCACTGCCCCTCTTACTTTGCACAAGTTTATCTACT
TCCTTTGATATGCCATTCTGTTATCCTGTATTTGCTTCCTGAACTCTGCA
TATTTATCCCTTTCGTCTTCGTCTTAAACTTCCTCTTTCCTTACCTCCCT
GAATTGATCTGATCCTACTATCTTCACGCGTTAGAGGTATTCCCCTACAC
TTTTGTCAACCACTCGTCGTTTTGTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATGAGCATAGATGGAAACCACA
GACTGGTTTTTTCAAGAAAGACCCTGGAAAACCCACAATTTTTGGTGTAT
TTGTGAACCTGTTAATGCTTTCCCATGGGTCCTGACTTGAATGACTTTGC
TCCCTTTTCCCACACCAGAGGATGTTTAAGAATCCCATAAGGTAGCAACC
AGCTGCCAAAGTGTTGAGGGGACCGCCTGAGATGTAGTGGAGCTGGTGTC
AGAAGGAATGTTCTGGATACAGAAACTCTGTGTTCAAAGTCCACATGTGT
GCAGAGCACATTTTTATAACATACCGCCCCACAGTTTGTTATTTTTTCCT
GGAATATGTGCCACTTTTCTGTGTTAAGAATGCACTGTGTCTCAAAGAAA
ATGGAGGTCTCTGATATTCTTCTACAAAATGCCATACATAGGACTAGAGA
TGTTTCTTTAAAGCTATGTGGCAGGGACCAATGTGACCTTAACCATCAGG
TTAAACTACAGAAATGTTGTGGTCATGGGATGCCTTTTATCTTTTACTTG
GCCCCATGGCTGCTGCATGAATTAGTGAAGGCTACAGAGCTGAGAAGAAT
ACCCCCACCAATATAGTTAGACTCAGTCTCAGAAAAAGTATCAATTTCCC
GACTTGGAAAGATGGGTTACTTTATATCTTTTGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_f01.b1 MSMg01no191_f01.b1 CHROMAT_FILE:
MSMg01no191_f01.b1 PHD_FILE: MSMg01no191_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:52 2005
         (236 letters)



>mm_chr12_99543577_99544212
          Length = 636

 Score =  420 bits (217), Expect = e-122
 Identities = 226/229 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtggagtagggactgttttcagactctgttgtggtgtctcctctatttctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtggagtagggactgttttcagactctgttgtggtgtctcctctatttctt 264

                                                                       
Query: 65  tagtaggtaaatcctggtaacttatcttttagttcaaaaaacttgaagaatagtatttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtaggtaaatcctggtaacttatcttttagttcaaaaaacttgaagaatagtatttga 324

                                                                       
Query: 125 accttatgaaaagttctaaatactatatagagactgccgcagaccctcttggcccctgtg 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 accttatgaaaagttctgaatactatatagagactgccgcagaccctctgggcccctgtg 384

                                                            
Query: 185 tctgcgtaggaaagagtctctagagtagatgggcaagattaggatgtag 233
           ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 tctgcgtaggaaagagtatctagagtagatgggcaagattaggatgtag 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no191_f01.g1 MSMg01no191_f01.g1 CHROMAT_FILE:
MSMg01no191_f01.g1 PHD_FILE: MSMg01no191_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:52 2005
         (234 letters)



>mm_chr12_99639615_99640248
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaaaacccacaatttttggtgtatttgtgaacctgttaatgctttcccatgggtcctga 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 434 ggaaaacccacaatttttggtgtatttgtgaacctcttaatgctttcccatgggtcctga 375

                                                                       
Query: 61  cttgaatgactttgctcccttttcccacaccagaggatgtttaagaatcccataaggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cttgaatgactttgctcccttttcccacaccagaggatgtttaagaatcccataaggtag 315

                                                                       
Query: 121 caaccagctgccaaagtgttgaggggaccgcctgagatgtagtggagctggtgtcagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 caaccagctgccaaagtgttgaggggaccgcctgagatgtagtggagctggtgtcagaag 255

                                                                 
Query: 181 gaatgttctggatacagaaactctgtgttcaaagtccacatgtgtgcagagcac 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gaatgttctggatacagaaactctgtgttcaaagtccacatgtgtgcagagcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)