BAC Information

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BAC

Clone NameMSMg01-191L24
Chromosome12 (Build37)
Map Location 13,987,232 - 13,987,542
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
Downstream geneAW125753, LOC100043256, Map1lc3-ps7, LOC668492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191L24.T7 (MSMg01no191_l24.b1)MSMg01-191L24.TJ (MSMg01no191_l24.g1)
ACCAG381655AG381656
length727733
length of high quality
(start - end)
318 (44 - 361)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no191_l24.b1 PHD_FILE: MSMg01no191_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:29 2005CHROMAT_FILE: MSMg01no191_l24.g1 PHD_FILE: MSMg01no191_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAAACTATTAGATTTGGGGATGTGAGTGATATGTTTTTCTTTGGGAT
GCTAATTAAGTGACTCTTTTGTTTGCTTGTTTGCTTTGTGCTTTGAAACA
GGATCTCACTAGGTAGCTTTGCCTGTTCTTGATGTTACTATATAGACAGT
GTTGGGCTTGAATTTATAGAGATCTACCTGCTTCTGCCTCCTGGGTGCTG
TCATTGAATGACTCTTGACATAGACGCTATAGATGATGTAGATGATATAG
TCTTGTCACAATGCCAAAAGTGGATGTGCCTGGGATGCATAATCCCTTTT
CTACCTCATAGATCAGATCTACCTACGCGGGTACATCTGAAGACAAGTGA
CTTTTTGTGCCTTTCTATCCATGGGATTTGATACCAAATCCTCACTTACC
ATTTGGCCCTATGTAGACAAACGTTGAGCCAAGCCTCTTTCCCTCCTCAA
TGTGTTATCACTCCCAAGACAGGCAGTAAGTGATTCTTAGCATACAATAC
AGCTTGAACAAATTGAGAATCCTAAAACATGATCCTAAAATATATGTATA
TATGTCATATACAAGGATTGTTCTTATGCTCTAGGCCAATGTTGTATTTA
TATCATTAGTTATATTTCCTTTCTTTAGTCAATTATTTTCCTGCCATGCA
TTAACTCAGGACAAGATATCTATTAAG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTAGCTCTGTACCCCATTT
TTTAATAGGGCTATTTGATTTTCTGGAGTCCAGCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGCCCCCTATCAGATTTAGGATTGGTAAAGATATTT
TCCTAATGTGTCGGTTGCTGTTTTGTCTTATTGACAATGTCCTTTGCCTT
ACACAAGCTTTGCAGTTTTATGAGGTCCCAAATAAATGGCAGTTTTATCT
GAAGAAAACTTCAAAATTCTGAAAATGTCTATTGAACGTTTTCTAATTAA
ATTATTTTATTTATTTTTATTCCACCCCCCGCCTGTCTTCCCAGTCCCCT
CTTCTCAGGTTCTTTAGCCCACATCCCATAAAATCTGCTTCTGACGGGAT
CCTCTCCACTTGCCCATCTACCCCCACCTCACCCCCACCAGCATCCCTCT
TGCCTGGAGCACCAAGTTTCCATAGCATTAAGTACATCTTCTCCCACTGA
GGCCATACACGGCAGTCCTCTGTTATACATGTGCCCAGACCCATGAAGTA
GCCCATCTATGTTCCTTGACTTTTGCCTCAGTCTCTGAGAGATCCAGGTT
AGTTGACACTGTTGTTTTTCCTATGGGGTTGCAATCCCCATCGGTTCCCT
CAGTCCTTCCTCTAACTCTTCCACATTGGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_l24.b1 MSMg01no191_l24.b1 CHROMAT_FILE:
MSMg01no191_l24.b1 PHD_FILE: MSMg01no191_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:29 2005
         (318 letters)



>mm_chr12_13987028_13987745
          Length = 718

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaactattagatttggggatgtgagtgatatgtttttctttgggatgctaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaactattagatttggggatgtgagtgatatgtttttctttgggatgctaatt 264

                                                                       
Query: 65  aagtgactcttttgtttgcttgtttgctttgtgctttgaaacaggatctcactaggtagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtgactcttttgtttgcttgtttgctttgtgctttgaaacaggatctcactaggtagc 324

                                                                       
Query: 125 tttgcctgttcttgatgttactatatagacagtgttgggcttgaatttatagagatctac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgcctgttcttgatgttactatatagacagtgttgggcttgaatttatagagatctac 384

                                                                       
Query: 185 ctgcttctgcctcctgggtgctgtcattgaatgactcttgacatagacgctatagatgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgcttctgcctcctgggtgctgtcattgaatgactcttgacatagacgctatagatgat 444

                                                                       
Query: 245 gtagatgatatagtcttgtcacaatgccaaaagtggatgtgcctgggatgcataatccct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtagatgatatagtcttgtcacaatgccaaaagtggatgtgcctgggatgcataatccct 504

                      
Query: 305 tttctacctca 315
           |||||||||||
Sbjct: 505 tttctacctca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)