BAC Information

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BAC

Clone NameMSMg01-192D03
Chromosome12 (Build37)
Map Location 43,275,102 - 43,275,506
singlet/doubletsinglet
Overlap genenone
Upstream geneImmp2l, EG638533
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192D03.T7 (MSMg01no192_d03.b1)MSMg01-192D03.TJ (MSMg01no192_d03.g1)
ACCAG381953AG381954
length1,2441,219
length of high quality
(start - end)
424 (31 - 454)125 (70 - 194)
definitionCHROMAT_FILE: MSMg01no192_d03.b1 PHD_FILE: MSMg01no192_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:14 2005CHROMAT_FILE: MSMg01no192_d03.g1 PHD_FILE: MSMg01no192_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGAGCAGTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CTTTTTCTTAAAAGTATAAGGAAAAGGGTAATCAAGGTGATGGCAGATGC
CATGATACCTGTGAAATAGAAAACAACACTGAAATGTCTACTTGATGGTG
CTCATGTTACAATCAATAAAGTTAAAAGGAGGGATGAAGCATTGAAGACT
ACTGGTGAAAATGACTTGTTTGTGATTTTACTTCTTTGGACTGAAAAACA
CATGTTAAAAATAACAATGACCACATACTGCAGAGCCCAGGTTTACAGGG
TTAGTATGGTCATACAAATGATAGTTATTGATTGTTTATGAGACAAAACA
CTGAATTGGAACAACAGAAATGATAATGAATTTCTCAGGAGGATAGCCAA
TTAAATGAAGGTGTAGTGAACAGTCTAGCTGACAGGTCCAACCTTTCGAC
ATTGTTACACACCCCCTTCATCTACAAAGTTTCTTTTTCTTGAGAACTAA
ACAATTTAGTTACAAAAAAAATCTCAGAATGTTTTAACTAACTTTATGAT
TTTGTTTTGGGCCACATGCATTGTGATCTTGGGACTGCATATGGCTATAG
GTCACAGGTTGAGCATGCCTGTTAGGGCCTGAAAATATTACGGAAGGAAG
GAACAATTTGAAACAGTGGAAATAGAGTGGAAGAATATCAGTCCATGATT
TTAGAGGAACGAAGGTTACTGCTAATGGACAGCAGCACAATAGAAACAGT
AGAAAACTCTTAGGGGGAAAATGCTCTGTGTTGAAGAGGTCAACAAAATG
ATGTAAACAGGTGATGTGGACTCTTTCCCTAGACACAGAAAAATGTTGAG
GCTTGGGGAGAAGTGAAGGCTGCGAGCTCGGTGCACCTTTGATGCATTTG
ATGACGAAGGTGACCAAAAAACCCGTATATGCATATGTGTGAATGTGTGT
GTGTCCTGTCATTTTCAANCTCCAACTATTTATCTTTTCTACATCATTCC
TCTCTTTTTCCTTTCTTTTTTTTCTTATTTCTCTTTTTCTTATCATTTTT
CTTTTTTCTTTTCTTTCCTTTTCTTTTTCTTTCTATATTGCCTCTTATCA
TTCTCCTCAATTATTTCTTCCCTTACTCCCTCTTATCCTTTACCTTCTCT
TACTTTTTTATCTATTTTTCTTTATCTTCTCCTATTCTCTCTCTTTCATT
TTCTCTTTTTTCTTTATTTCTTTTTCTTCTCTTCCTCTTTCTTT
NNNTTACCTGGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATATAAGAACCAGAAAACAACAACAAAAGCA
TCATTCACTCTTTTAGTAGTAGAATGGAAAGAGGTAAAAGGTGTATTCTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNTNTNTN
TGTTTTGGTTGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT
TGTTTTTNTGTTTTTTTGTGTGTTTTTTTTTTTTTTTGTGTTTNGTGTTT
GTTTTTTTTTTTTGGTTTGTTTTTTTTTGTTTGTTTGTGTTTGTTTGGTT
GTTTGTTTTGTTTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTGT
TGGTTTTTGTTTTTGTTTTTTTGTGTGGGGGGTGTTTTTTTTTTTTTTTC
CCCCCCCCCCCGGNNNNNCCCCCCCCCCCCAAAAAAAAGGGGGGGNTTTT
TNNTNNTTTGNTGTTNTTTCCTCCTTCTTTTTTCTTTTTCCTTCTTTCTG
TTCCTTTTTTTGTCCTCTTTCTTTTTTGTTTTTCCTTTCTTTTTTCTTTC
CTCCTTTTCTCTCTCTTCTTTTTTTTTTTTTTTTCTTTTCTTTTTGCTCT
TCCTTTTTTTTTTTTTTTTTCCTTTCTTTCTCTTTTCCTTTTCCTTTTTT
TTTTCTTTCTTTCTTCTTTCTTTTTTTCCCTTTTTTTTTCCTTTTCTTCT
TTTTTTCTTTTTTCTCTTTTCCCTTCCTTTCTCTTTTTTTCTTTTTCTTT
TTTCTCCTTTTCTCTCTCTCTTTTTTCTTTCTCTTTTTTTTCTCTCTTTT
TCTTTCCTTCTTTTTCCCCTTTTCTTTTTCTTTTTCTCTTTCCTCTTCTT
TTTCTCTCTTTTCCTTCTTTTTCTCTTTTCTCTCTGTTCTTTTTTTTCTT
TCTTCTTTTTTTTTCCTTCTTTTCTCTTTTTTTTCTTTCTTCTTTTCTCC
TTCTTTGTCTTTTCTCTTTTCTCTTCTTCCCTCTTTTCTCTTTTCTCTTT
TTTTTTTTCTCTCCTCTCTTTTCTTTCTTCTTTTTTTTCTCCTCTCCCTT
CTTTTTTTTTCTTTCTTTCTTTCTCCTTTCTTTTCTTTTCTTTCTTTCCT
TTCTTTGCTTTCCCCTTCCTTCCTCTTCTTTTTTCTCTCCTTCTTCTCCC
CTTTTGTTCTTTTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_d03.b1 MSMg01no192_d03.b1 CHROMAT_FILE:
MSMg01no192_d03.b1 PHD_FILE: MSMg01no192_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:14 2005
         (424 letters)



>mm_chr12_43274883_43275706
          Length = 824

 Score =  723 bits (374), Expect = 0.0
 Identities = 398/406 (98%), Gaps = 2/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 20  tctttttcttaaaagtataaggaaaagggtaatcaaggtgatggcagatgccatgatacc 79
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 tctttttcttaaaagtataaggaaaagggtaatcaaggagatggcagatgccatgatacc 565

                                                                       
Query: 80  tgtgaaatagaaaacaacactgaaatgtctacttgatggtgctcatgttacaatcaataa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtgaaatagaaaacaacactgaaatgtctacttgatggtgctcatgttacaatcaataa 505

                                                                       
Query: 140 agttaaaaggagggatgaagcattgaagactactggtgaaaatgacttgtttgtgatttt 199
           |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 agtt-aaaggagggatgaagcattgaagactactgatgaaaatgacttgtttgtgatttt 446

                                                                       
Query: 200 acttctttggactgaaaaacacatgttaaaaataacaatgaccacatactgcagagccca 259
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 acttctttggactgaaaaacacatgttaaaaataacgatgaccacatactgcagagccca 386

                                                                       
Query: 260 ggtttacagggttagtatggtcatacaaatgatagttattgattgtttatgagacaaaac 319
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 ggtttacagggttagtatggtcatacaaatgatagttattgattgcttatgagacaaaac 326

                                                                       
Query: 320 actgaattggaacaa-cagaaatgataatgaatttctcaggaggatagccaattaaatga 378
           ||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 actgaattggagcaaacagaaatggtaatgaatttctcaggaggatagccaattaaatga 266

                                                         
Query: 379 aggtgtagtgaacagtctagctgacaggtccaacctttcgacattg 424
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggtgtagtgaacagtctagctgacaggtccaacctttcgacattg 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)