Query= MSMg01no192_m13.b1 MSMg01no192_m13.b1 CHROMAT_FILE:
MSMg01no192_m13.b1 PHD_FILE: MSMg01no192_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:38 2005
(423 letters)
>mm_chr12_49261311_49262133
Length = 823
Score = 654 bits (338), Expect = 0.0
Identities = 362/370 (97%)
Strand = Plus / Minus
Query: 16 gaattcaaaaatccattttattctcttttgcactattgcctaattattgtcaaagagttg 75
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 443 gaattcaaaaatccattttattctcttttgcactattgcccaattattgtcaaagagttg 384
Query: 76 cggtatttcatgaagtactacttaagttcattgctttcgtaaaatgtatggtgttaaaat 135
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 cggtatttcatgaagtactacttaagttcattgctttcataaaatgtatggtgttaaaat 324
Query: 136 aaaaacaaaattttttcccaagttataagtaaacatttttttcgagttaaactctctgat 195
||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 323 aaaaacaaaatattttcaaaagttataagtaaacatttttttcgagtaaaactctctgat 264
Query: 196 attcttgaatataatcttatattttgtaattttgactaaaatactttcaataatattttt 255
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 attcttgaatataatcttatattttgtaattttgactaaaatactttcagtaatattttt 204
Query: 256 ataaataattaattgtaattcattgtatagatacatacttacagttataacttaataact 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ataaataattaattgtaattcattgtatagatacatacttacagttataacttaataact 144
Query: 316 gcttcagtaacattctacaaattttctttcactattaaaataattgattcataaaataat 375
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 143 gcttcagtaacattctacaaattttctttcactattaaaataattgattcatagaataat 84
Query: 376 ttgaaaattg 385
||||||||||
Sbjct: 83 ttgaaaattg 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no192_m13.g1 MSMg01no192_m13.g1 CHROMAT_FILE:
MSMg01no192_m13.g1 PHD_FILE: MSMg01no192_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:38 2005
(390 letters)
>mm_chr12_49206482_49207271
Length = 790
Score = 698 bits (361), Expect = 0.0
Identities = 384/395 (97%), Gaps = 6/395 (1%)
Strand = Plus / Plus
Query: 1 cccaaaacctagtgaagtaaaataaaaggaagaactgaaggtgaagtacccaaccatact 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cccaaaacctagtgaagtaaaataaaaggaagaactgaaggtgaagtgcccaaccatact 260
Query: 61 ggatatatctaaacatgaactgcacattgaaggatcaggaaacatggcaaaggagttaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatatatctaaacatgaactgcacattgaaggatcaggaaacatggcaaaggagttaaa 320
Query: 121 agagtttaaaggccaaaagagcagggcacctactaggtggttgtgtctttttaaaatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtttaaaggccaaaagagcagggcacctactaggtggttgtgtctttttaaaatgac 380
Query: 181 atgaaagcatatcagtgataacagaatctgccttaataagattgaaatagtgaaaaacat 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 atgaaagcatatcagtgataacagaatctgtcttaataagattgaaatagtgaaaaacat 440
Query: 241 gatagaaaagttaatgttcaaggagaattttaggtctcttacataaaaaaaaacatgcaa 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gatagaaaagttaatgttcaaggagaattttaggtctcttacataaagaaaaacatgcaa 500
Query: 301 ctgagagtgtgagatatatcctttctaaggatgagtatatatatatatatatatatatat 360
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 ctgagagtgtgagatatattctttctgaggatgagtatatatatatatatatatatatat 560
Query: 361 atatatatatata------catacatacatatata 389
||||||||||||| ||||||||||||||||
Sbjct: 561 atatatatatatatatatacatacatacatatata 595
Score = 76.1 bits (39), Expect = 4e-18
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 336 tatatatatatatatatatatatatatatatatatatacatac 378
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 577 tatatatatatatatatatatatatatatatatatatatatac 535
Score = 76.1 bits (39), Expect = 4e-18
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 335 gtatatatatatatatatatatatatatatatatatata 373
|||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gtatatatatatatatatatatatatatatatatatata 542
Score = 72.3 bits (37), Expect = 5e-17
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 338 tatatatatatatatatatatatatatatatatatacatacatac 382
|||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 579 tatatatatatatatatatatatatatatatatatatatatatac 535
Score = 68.4 bits (35), Expect = 8e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 335 gtatatatatatatatatatatatatatatatatatata 373
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 584 gtatgtatatatatatatatatatatatatatatatata 546
Score = 64.5 bits (33), Expect = 1e-14
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 335 gtatatatatatatatatatatatatatatatatatatacatacatacatata 387
|||| ||| |||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct: 588 gtatgtatgtatatatatatatatatatatatatatatatatatatatatata 536
Score = 62.6 bits (32), Expect = 4e-14
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 346 tatatatatatatatatatatatatatacatacatacatatata 389
|||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct: 579 tatatatatatatatatatatatatatatatatatatatatata 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 9
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space: 297561
Effective search space used: 297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
