BAC Information

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BAC

Clone NameMSMg01-192P13
Chromosome12 (Build37)
Map Location 25,394,085 - 25,464,292
singlet/doubletdoublet
Overlap geneRrm2, LOC668719
Upstream geneLOC677338, EG668701, LOC668471, LOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1
Downstream geneMboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192P13.T7 (MSMg01no192_p13.b1)MSMg01-192P13.TJ (MSMg01no192_p13.g1)
ACCAG382468AG382469
length1,2031,236
length of high quality
(start - end)
276 (120 - 395)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no192_p13.b1 PHD_FILE: MSMg01no192_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:06 2005CHROMAT_FILE: MSMg01no192_p13.g1 PHD_FILE: MSMg01no192_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(25,464,020 - 25,464,292)(25,394,085 - 25,394,461)
sequence
NNCCGGCATTGGGGCTATAGACTACTAAGGGAGAGGATCCGCGGAATTAG
AACCCATCACTAGCCCTTTAAATTGCAATTAGAGATATATCTGTGGGGAG
ATACCCTTTAAACCACCGCTGTCAGGAGGGAGCCACTTCTCAGCAACCAC
GCCTTCAAATTCATCTGCATTAACTTACCCACTCTCCACTTCTCTGGAAT
GTGGACCTTCTGGCAGGAGGGACTTGAACTCAGCCCTGTGTTTCTTATTC
TGCAGTTTGGTGCAGATGGACATGATGACTCAGCCAATGTGAACCCTAGC
CACTGTGCCCCGGGGCTTCCCATTGGCACCCCACATACCTACCTGTCTGA
AGCCTGGATTGGGGACAACACTGAGATCAGGGACTTAAATAATTTTTTTT
AAANNACNCCAAGGNCNCNAAGGGCAACCCAGAACGGAAACATTTTTTTT
TTTCCCCCCCCCCCGAAAAGNGCCCCCCCCCCAAAGAGAAAGGGGGGGGN
NNGNNCNNGNNNGNCNNNNNNGNNNGCNGGCGNNNGNNGCGNNNNNNCGG
CNGGNCNGCGCCGCCNCNNGCCGGCCCGGGCCCCNNGGNNGGCCCCNNGG
GGGNGGGCCCGGCNCCCCCGCCCGGGCCCCCNCGCCGGCCGGCNGCGGCC
GCGCGCGCGCCGGCCCCCCCCCCCCGCCCCCCCGCCGGCGCGCCCGCGCC
CCCCCCCCGGGGCCCCCCCGCCCCGCCCGCCGCCCCCCCGCCCGGCCCCC
CCGCCCCCCCGCCGCCCGGGCCCCGCCCCGGCCGCCCCCCCGGCCCCCCC
CGCCCCGCGCGGCCCCCCCCGCCCGCCCCCCCGCGCGCGCGGCCCCCCGC
CCCCGCCCCCGCGCCCCCCGCCCCCCCGCCCGGGGCGGCCCCCGCCCCGG
CCCCGNCCGCCCCCCCCCGCCCCCGCCGCCCGCGGGCCCCCGCCGCCCCN
CCCCCCCCGCGCCCCCGCCCGCGCGCCCGCCGCCGCGGCCGCCCGGCCCG
CCGGGCGCCCCCCGGCCCGCCCGCCCGCCCCCCCGCCGCCCGCCCGCGGC
GCCCCGCCGCCCCCGCCGCCCCGCCGCCGCCCGCCCCCCCCCCCGCGGCC
GCGCCCGCCGCCCGCGCGCCCCCCGGCGCCGCGCCCCCCCCCCCCGCGCC
CCCCCCCGGNCCCCGCGCGCCCCGCCGCCCCCCGCGCCGCCCCGCCCGCC
CCG
NNGGGCTGATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGTAATGAGATGGTTTGGGGGACTTCAGTTT
TAAAGTGTGTGTGTATGAGAGAGAGAAAGAGAGAGAGACCTACAGACCTG
CTAATCGTGAACTTCTAAACTTCAGGTGGACCTTTCCAAGGATATTCAGC
ACTGGGAAGCTCTGAAACCCGATGAGAGACATTTTATATCTCACGTTCTG
GCTTTCTTTGCAGCGAGTGATGGCATAGTCAATGAGAACTTGGTGAGTTG
GCATGAAATACCCATAATTCACTTAGATCCAGAACTGGTTCCTGGCTCTC
TATCTTTTGCCCTGAAGCGGGGCTGGAGGGATAGATGACTGACTCCTGTC
TCCGCTCTGGTTAACACACTTCCTGCTTGGGCGGAAGACCCAGGTTCTTT
TTTTCCCCCCCCCTGTTGGACTGCTTCCCATCTGAAAAAAGAGGGGTCTC
ACCAAGGCAACTCTGACCTTGGGCACTTGCCTATACATGCACGGACCCAT
TCCCAGGCAAGCACAAGCAAAACAAACTTTTTAAGAGCTATGAATGTTAT
GTTAACGTTCATCATGTTAGTCTTTCCCTCTGCTAAGGAGCAGTAGTGAG
TTTTTCTCTTTGTACCTACATGCTTAACTTTTTGTGGATTTCCATAAGAC
TTTGGCTGTATACTTCCTTAACTCCAAGTGGTTCCTTGTAATGAACTTGA
ACCAGAATTAGGGATTAACTGTGTTTAAAGAAACCCCTGTGGGGCCCGGG
GTGGTCCTCCAAGGTTTTTAACTCTTGTATTTTTTTGTTAAATACTTGGC
ATATTACTATTAATTGGTTTCCAATTGGTTCATTTTCACGTTATAACCTT
CATAATTATCCTTGTTTGTCTTTCCTGTTTATCCTCCTTTATTTTCGTCT
TCTTCGCTCTTTAATACTATCCTTTTTTTTTTTCTTTTTCCATTTTTTAT
TTTTATAAACTTTTTTTTTTATTCTTTCTTATCCTTCTTTTTTTTATATT
TTTACTATCTCTCTACTTTCTCTTTCTTCTTTTTTATTTCTTTCTCACTT
CTGTTTTCTTCTCATCTACTCTCTTTCTTTATCTTTTTACTTCTCTTCTT
TGTATCCTATCTATTTTCTCACTTTATCCTATACTTTCTATTTCTTTATC
TCTCCTTCCTCTTTTTCTTTCCCTCTTTTCCGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_p13.b1 MSMg01no192_p13.b1 CHROMAT_FILE:
MSMg01no192_p13.b1 PHD_FILE: MSMg01no192_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:06 2005
         (276 letters)



>mm_chr12_25463820_25464495
          Length = 676

 Score =  489 bits (253), Expect = e-143
 Identities = 268/273 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcaggagggagccacttctcagcaaccacgccttcaaattcatctgcattaacttacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 473 tgtcaggagggagccacttctcagcaaccacgccttcaaattcatctgcattaacttagt 414

                                                                       
Query: 61  cactctccacttctctggaatgtggaccttctggcaggagggacttgaactcagccctgt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gactctccacttctctggaatgtggaccttctggcaggagggacttgaactcagccctgt 354

                                                                       
Query: 121 gtttcttattctgcagtttggtgcagatggacatgatgactcagccaatgtgaaccctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gtttcttattctgcagtttggtgcagatggacatgatgactcagccaatgtgaaccctag 294

                                                                       
Query: 181 ccactgtgccccggggcttcccattggcaccccacatacctacctgtctgaagcctggat 240
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 293 ccactgtgccccggggcttcccaaaggcaccccacatacctacctgtctgaagcctggat 234

                                            
Query: 241 tggggacaacactgagatcagggacttaaataa 273
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tggggacaacactgagatcagggacttaaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no192_p13.g1 MSMg01no192_p13.g1 CHROMAT_FILE:
MSMg01no192_p13.g1 PHD_FILE: MSMg01no192_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:06 2005
         (377 letters)



>mm_chr12_25393885_25394661
          Length = 777

 Score =  721 bits (373), Expect = 0.0
 Identities = 376/377 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaatgagatggtttgggggacttcagttttaaagtgtgtgtgtatgagagagagaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaatgagatggtttgggggacttcagttttaaagtgtgtgtgtatgagagagagaaaga 260

                                                                       
Query: 61  gagagagacctacagacctgctaatcgtgaacttctaaacttcaggtggacctttccaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagagacctacagacctgctaatcgtgaacttctaaacttcaggtggacctttccaag 320

                                                                       
Query: 121 gatattcagcactgggaagctctgaaacccgatgagagacattttatatctcacgttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatattcagcactgggaagctctgaaacccgatgagagacattttatatctcacgttctg 380

                                                                       
Query: 181 gctttctttgcagcgagtgatggcatagtcaatgagaacttggtgagttggcatgaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttctttgcagcgagtgatggcatagtcaatgagaacttggtgagttggcatgaaata 440

                                                                       
Query: 241 cccataattcacttagatccagaactggttcctggctctctatcttttgccctgaagcgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccataattcacttagatccagaactggttcctggctctctatcttttgccctgaagcgg 500

                                                                       
Query: 301 ggctggagggatagatgactgactcctgtctccgctctggttaacacacttcctgcttgg 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 ggctggagggatagatgactgactccagtctccgctctggttaacacacttcctgcttgg 560

                            
Query: 361 gcggaagacccaggttc 377
           |||||||||||||||||
Sbjct: 561 gcggaagacccaggttc 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)