BAC Information

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BAC

Clone NameMSMg01-193H20
Chromosome12 (Build37)
Map Location 105,891,636 - 105,892,108
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
Downstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193H20.T7 (MSMg01no193_h20.b1)MSMg01-193H20.TJ (MSMg01no193_h20.g1)
ACCAG382773AG382774
length746747
length of high quality
(start - end)
---476 (77 - 552)
definitionCHROMAT_FILE: MSMg01no193_h20.b1 PHD_FILE: MSMg01no193_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:56 2005CHROMAT_FILE: MSMg01no193_h20.g1 PHD_FILE: MSMg01no193_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATGCGAACTGATTCCCTATGAGTTTCAGTGCGGCCTTACTTCTTGATCT
CGATCCTGTGATACAACTATGATGTATAGAAGTGAAAGGAATCAATGCAG
AACTGTCTCAAAAGCTTTGGTATGGAACACTGACTCTTGCAACTGATATT
TCTTCGTTAAACTTTGTCTACTAAGCGAATCATCTCACCCCTTCTGAACT
GCATGGCATACGCGTTACTAAGCTGAGTAACACTCCTGAACTGGCCTTAG
GCATATACATCCTGTGTGACTAACAGCTATACACAACTCAGTAGATACTA
TCAGCTGTGAACACAGCATAATCTCTGGATAGAAACTACTCGTTTCATGT
TGTCCGCATCCCTGCTTCCACCCAGTCCTGGAGCATCATCATGAACTGAT
GAGCTGATTGCTGAGCTTTCTCTGGGCAATGATTCTGTTCAGCGGACAAG
CACCACGGCTTCTGCTGCACAGAAACTGTCCATGCTGAATGAATATAGTT
ACCCTCATCCAGACAGCATCCCTCCCACTCTGCTGCAAATCAAGTGTCAT
TGATCTGTCCCAGACGGGGCATGTACTAAGAAGAGGTATCTCATGCCTAT
GCTGCTCTGTGCAACGTGTGACAGCAAGACTTACTCTCTATGCTTACGAG
ATGCGCTCTCAGCTTGGTCTTCAAGCTGAAGCAGTAGACACGAGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTTTCCAACACGCATGTGCT
CAGCTGAGCAGCAATCCTAACTCCCCTGTGCAGGAACTCTCTGTCTGCAC
TCACAGGTTTTCTGTTTGTAGCAAGAGGCCTAGGGCTTGGGACAAGGCAG
GCAGGAGGTTCACTCAACAAGGGGCTGCCACAAAACTCCATCGGTGACAA
GCATGGTATCTTAAAACAGAGCAGAGCCAAAGGGAGGCCCCACTTGTATG
TAGATTTGTGAGGGACTCATCAGGAGCCTCTGCCATGGAACTGAGGAGGC
CAAGAGCTCCCACTATTTCAGAGGGGTGAGCTGAGAAGAGCTGTGATGTC
ATTAGATCCCTGACCAATAGGGCGGGAGCTGGGACCAGGTGGGCAATATA
TGCCCTGGAAAGAGAAGGCCAGCAAATCTGGGGCTCCACTACTTACATCA
TAAGAAGGAAAAAGAATTTCACCTCAAAGAGTGGGAGAGGAGGGAGGGAA
GGGAGGTATCTNCNNNNTTTGTTTGTTNTCTGTGGGTGCCAGCTTCTCTG
CTGTGCTGCGTGCTCTGGCGCCACGACGGCTACCCTTGGCTAGGACCTAC
CATTTCTAGAAGGCCTATGTGTAATGTAGAATTCCTGTACCTTAACAAAA
CAGCTCTCTCTTTATTTTGTACACAATGTCTTGATGCACCTGCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_h20.g1 MSMg01no193_h20.g1 CHROMAT_FILE:
MSMg01no193_h20.g1 PHD_FILE: MSMg01no193_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:56 2005
         (476 letters)



>mm_chr12_105891436_105892311
          Length = 876

 Score =  907 bits (469), Expect = 0.0
 Identities = 472/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgctttccaacacgcatgtgctcagctgagcagcaatcctaactcccctgtgcaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgctttccaacacgcatgtgctcagctgagcagcaatcctaactcccctgtgcaggaa 260

                                                                       
Query: 61  ctctctgtctgcactcacaggttttctgtttgtagcaagaggcctagggcttgggacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctgtctgcactcacaggttttctgtttgtagcaagaggcctagggcttgggacaag 320

                                                                       
Query: 121 gcaggcaggaggttcactcaacaaggggctgccacaaaactccatcggtgacaagcatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaggcaggaggttcactcaacaaggggctgccacaaaactccatcggtgacaagcatgg 380

                                                                       
Query: 181 tatcttaaaacagagcagagccaaagggaggccccacttgtatgtagatttgtgagggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcttaaaacagagcagagccaaagggaggccccacttgtatgtagatttgtgagggac 440

                                                                       
Query: 241 tcatcaggagcctctgccatggaactgaggaggccaagagctcccactatttcagagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tcatcaggagcctctgccatggaactgaggaggccaagagctcccactatttcagggggg 500

                                                                       
Query: 301 tgagctgagaagagctgtgatgtcattagatccctgaccaatagggcgggagctgggacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagctgagaagagctgtgatgtcattagatccctgaccaatagggcgggagctgggacc 560

                                                                       
Query: 361 aggtgggcaatatatgccctggaaagagaaggccagcaaatctggggctccactacttac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgggcaatatatgccctggaaagagaaggccagcaaatctggggctccactacttac 620

                                                                
Query: 421 atcataagaaggaaaaagaatttcacctcaaagagtgggagaggagggaggga 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcataagaaggaaaaagaatttcacctcaaagagtgggagaggagggaggga 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)