BAC Information

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BAC

Clone NameMSMg01-193L04
Chromosome12 (Build37)
Map Location 120,175,388 - 120,175,734
singlet/doubletsinglet
Overlap geneAbcb5
Upstream geneDnahc11, Sp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8
Downstream geneItgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632, LOC668633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193L04.T7 (MSMg01no193_l04.b1)MSMg01-193L04.TJ (MSMg01no193_l04.g1)
ACCAG382894AG382895
length761853
length of high quality
(start - end)
460 (44 - 503)159 (133 - 291)
definitionCHROMAT_FILE: MSMg01no193_l04.b1 PHD_FILE: MSMg01no193_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:16 2005CHROMAT_FILE: MSMg01no193_l04.g1 PHD_FILE: MSMg01no193_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGA
ATTCAGTGAAGCTTCACTGGTAGGAGAAAAATTCAGGTAAGAATTTAGAT
GCTGGGTAGTGAGAAGCTACTCGGGTTTCAAATTATGTGGCAGTAAAGTA
CTCTGTAAAGTCTCACTCGCTCTGGTTCTCTATTGGTTAATGTCCTAGCT
TCCTTTCCTGCTGCTGTGAAAATCTATTCTGACAAGGGCAACTTGGGTAT
GGAAGGGTTTGTTTTAGCTCATAGTTTCAGGATAAAGTCCATCACAGCAG
AGAAGTCAAGGGCAGAGAGAGAATAAATGTGTGCATACATGTATTCAGCT
CTCTTCTAGCCTATACAATTCAGGATCACCTGCCAAGGGAATCAGTCCAT
CCGTAATGGGTAGGTCTCCCCTCCTCAATTAATATAATCAAGACAATGCT
CAACAAACATTCTCACAGACCAGGCTGATCGAATTCTAGATCTGTTGAGC
TGACAATTAAAGGTAACCGTTCAGAGTCAGTTTTGTGTTGCTGTAACACT
AATAACAAGAGAGACTACCGTTTTATTTTGGTCCTGCCCTGATAGGGTCA
GGTTATGCTATCGTGTAGTAAGTTCCTTTGTCAAATAACTGTCACTTTTC
GTACGACTCTTTGTTATTCTTTACTTCTTTTCTGCTTTTGTCTTTTACTT
CTCTTATTTCTATCTCTCCATTTCGGTCTTTTTATCATCTTTATCCTTTA
TCCCGCCCCCT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCGAATTCTCTATCACAGAGCAGGAGGTGGG
GTAGGGGAGAAGAGTGCCACTGGTCCTGGCCCGGGCTTCTGAAACCTTGA
AGACCCTCCTCCCAAGTAACATACTTCCTCCAACAAGGCCACATATACTT
CAATAAAGCCATACCCGCTAATAGTGCCACTCCTTATAGTCCTAAGGGGC
CTATTTTCATTTAAACCACCACGGGGGGGGGGGGATTCCGACTTGTATTC
TCCCTCTATTCCTCTCTACTTATTCTACTCTTTTTTTTTTTTTTCTCTAC
TTTATTAATCATAAACAACATTTTTTTTTTTTCCCCCCCCCCCCCCCAAT
TCTTTTTTTATTATTGTTACCTTTTTCCTTTCTCCTCCCTGTCACAAAAA
CAAAAAACACCCCCCCGCGAATTTTAGTATAATTTAGCATACTCTGAAAC
TACTAATTTCATAACATAAACGTCAAATCTCCAACTTCTTACAATTATAC
ATCTTTCTAACTCTCAATCTTCTATTCCCTATTATAGTTTTTTTTTCTAT
TCACTTTATTTCTCTATTTATAATTGTTTATAATATATTGTTTATTACCA
CTTCTATATTTCACTACTTTTCTTCATTTCGTCTCTTCCCTCCACTTACT
TCTCTATCTCATAATTACTCTTTATTATCTTAAACACTCTCTCTACAACC
CACCCTACCCCTATTTTTTTCTTCTTATGCTCTTTCCATTACTTTCTCTT
TCACATCTCCCACACCACCTATACACATACATCTTATACATTTTTTTTAT
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_l04.b1 MSMg01no193_l04.b1 CHROMAT_FILE:
MSMg01no193_l04.b1 PHD_FILE: MSMg01no193_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:16 2005
         (460 letters)



>mm_chr12_120175388_120176247
          Length = 860

 Score =  580 bits (300), Expect = e-170
 Identities = 336/348 (96%), Gaps = 1/348 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcagtgaagcttcactggtaggagaaaaattcaggtaagaatttagatgctgggta 65
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gaattcagtgaaacttcactggtaggagaaaaattcaggtaagaatttagatgctgggta 288

                                                                       
Query: 66  gtgagaagctactcgggtttcaaattatgtggcagtaaagtactctgtaaagtctcactc 125
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 287 atgagaagctactcgggtttcaaattatgtgacagtaaagtactctgtaaagtctcactc 228

                                                                       
Query: 126 gctctggttctctattggttaatgtcctagcttcctttcctgctgctgtgaaaatctatt 185
            |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 227 cctctggttctctcttggttaatgtcctagctttctttcctgctgctgtgaaaatctatt 168

                                                                       
Query: 186 ctgacaagggcaacttgggtatggaagggtttgttttagctcatagtttcaggataaagt 245
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 167 ctgacaagggcaacttgggtaaggaagggtttgttttagctcatagttccaggataaagt 108

                                                                       
Query: 246 ccatcacagcagagaagtcaagggcagagagagaataaatgtgtgcatacatgtattcag 305
           ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 107 ccatcacagcagaga-gtcaagggcagaaagagaataaatgtgtgcacacatgtattcag 49

                                                           
Query: 306 ctctcttctagcctatacaattcaggatcacctgccaagggaatcagt 353
           |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 48  ctctcttctagcctatacaactcaggatcacctgccaagggaatcagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)