Query= MSMg01no193_p11.b1 MSMg01no193_p11.b1 CHROMAT_FILE:
MSMg01no193_p11.b1 PHD_FILE: MSMg01no193_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:42 2005
(319 letters)
>mm_chr12_16176408_16177126
Length = 719
Score = 609 bits (315), Expect = e-179
Identities = 315/315 (100%)
Strand = Plus / Minus
Query: 5 gaattctactttgcttacataagagaagttgaactctatctttctgacacggggaaacct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaattctactttgcttacataagagaagttgaactctatctttctgacacggggaaacct 397
Query: 65 tggatggcaggatggtcctggaatctgtcctaaaagacacagtatctctgtcagtcctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tggatggcaggatggtcctggaatctgtcctaaaagacacagtatctctgtcagtcctgt 337
Query: 125 gcctttatttgttgatgttggaggagacctgagtaacgtaagcaggagaagttttaaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcctttatttgttgatgttggaggagacctgagtaacgtaagcaggagaagttttaaata 277
Query: 185 accacggtgaagagaatcttttttttccaagaaataaacattaaaataccacaatgagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 accacggtgaagagaatcttttttttccaagaaataaacattaaaataccacaatgagag 217
Query: 245 gagaggacattcctcagttggcagaatgtttgcttggtatgggcaaagttctgggttcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gagaggacattcctcagttggcagaatgtttgcttggtatgggcaaagttctgggttcaa 157
Query: 305 ttttcaaaaacacat 319
|||||||||||||||
Sbjct: 156 ttttcaaaaacacat 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_p11.g1 MSMg01no193_p11.g1 CHROMAT_FILE:
MSMg01no193_p11.g1 PHD_FILE: MSMg01no193_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:42 2005
(520 letters)
>mm_chr12_16060566_16061485
Length = 920
Score = 953 bits (493), Expect = 0.0
Identities = 514/521 (98%), Gaps = 2/521 (0%)
Strand = Plus / Plus
Query: 1 ctggtaaggccccttggctcaaggcctccataaaaccttggcaccagccttcctgacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggtaaggccccttggctcaaggcctccataaaaccttggcaccagccttcctgacttg 260
Query: 61 gggctttcctcgttaaacccgagagacaggaggtagttgtgtggccttcagagacctagc 120
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gggctttcctcattaaacccgagagacaggaggtagttgtgtggctttcagagacctagc 320
Query: 121 tgagacagactagtctcctcttccctgagggctcagggctgagacaggcctcttaaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagacagactagtctcctcttccctgagggctcagggctgagacaggcctcttaaagtg 380
Query: 181 aggttaggaggaggagacattaggctctgtaggggagagggagagaa-gtagccatgaca 239
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 381 aggttaggaggaggagacattaggctctgtaggggagagggag-gaaagtagccatgaca 439
Query: 240 atgggtatgtgcaagttagaactcaagagttccaaaactaacatgcctcgcgtacctttg 299
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 440 atgggtatgtgcaagttagaactcaagagttccaaaactaacatgccacgcgcacctttg 499
Query: 300 cgaccgatgaagctccctgttggaaaaatcacaccattgatatacaccgtccatcttgta 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgaccgatgaagctccctgttggaaaaatcacaccattgatatacaccgtccatcttgta 559
Query: 360 cttgaacctgagctcagcctccttacatcttctttatcatttgggtcttcttgttgtttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttgaacctgagctcagcctccttacatcttctttatcatttgggtcttcttgttgtttt 619
Query: 420 gtaggaataacaaggcatgatgcagaagcagttttcagagagagaggaaaggataaagga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtaggaataacaaggcatgatgcagaagcagttttcagagagagaggaaaggataaagga 679
Query: 480 atgagggcccagtttcatttctgatgtgttaaaaagctggg 520
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgagggcccagtttcatttctgatgtgttaaaaagctggg 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
