BAC Information

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BAC

Clone NameMSMg01-194E02
Chromosome12 (Build37)
Map Location 52,346,871 - 52,347,473
singlet/doubletsinglet
Overlap genenone
Upstream genePrkcm, LOC100039517, LOC636070
Downstream geneLOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194E02.T7 (MSMg01no194_e02.b1)MSMg01-194E02.TJ (MSMg01no194_e02.g1)
ACCAG383248AG383249
length712760
length of high quality
(start - end)
604 (66 - 669)208 (77 - 284)
definitionCHROMAT_FILE: MSMg01no194_e02.b1 PHD_FILE: MSMg01no194_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:04 2005CHROMAT_FILE: MSMg01no194_e02.g1 PHD_FILE: MSMg01no194_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGTCATCCCGTCTGGTGGCAGGTGCCTTTACCCACTGAGTCAGC
TCTCTGCTCTACCCCAATTAGAAGCTACAGTCAAATTGTCTTTATACATT
CTTTCTAGTGTGCTTCCAAAATACCTCCTACTAACTATTGCTTCTCTAAA
GTCATCATTACATATAGAATTAGGGTCCTGAAGTTACCTTCACAGCCTTC
CTATTTTACTCTTTTTACATTTAATGTTCTTGAATGAAATTATATGTGTA
TTAGAGTTCTACAGTTTATATTTCTAAAGCCACACCAAATTTCTCTGCAA
AGTTATATCTTATCTAGGATTCGAGACGTCTATGACAATGGTTCCTCACT
TAGAATGGTGTCAGGAATTATAATCAACTCTGAAGGTTTTTCCTGTTCTG
AGATAAGCTTAGTTTCAGAAGCAATTGAACTTTGAGCATTATTAACTGGC
TACAAAGGAGGGGAAATAGGTCAGGAGGCAAGAAAGGGCAGAAGGAAATT
TATGAACAGCAAAGAAAAGAATAATAGGACGGAGGTCATCTGTTTCAAGC
TGAGATTTGAGGTATCTTGTAGAAAGCTGGTTTTAAATTCATTTTTTTCC
TTTCAAATTTGCCAAAGAATCTTTCAGTAATGCAACCTTAGAATCTGAGT
TCTTTTGTTACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCAGATCAACATTCAGGGCCCC
ATGAAATCTGAGGGAAGCAGTGATGGAAGACACAATTTGACCTATCAACC
TGTTTAGGTTAGTGTAGGTTGGGCGCTCACTGTCGAGGTTTCTACGACAG
ATATCATAGATGGCCTCATTGTCTACCATGAAGGCACAATCAGAGTGCTC
CAGGGTGGTGTGGGTGGTGAGGATGGAATTGTAGNNCTCTTCCCCATCTT
CGTATATCTGTTTCGTTGGCTTTATATAGAATCCCAGCTTTGGATTCCTT
TCCGTAATCCTTAGATAGCCGGTCCTTCTTTATTAAATTGAATTTTTACC
CCATTTTTATGCCCTTCCCCCCCTACCATATTATACTCCCCGTATACACA
TTCATTGTACTTACTTTTTGCATCCCATTGTTTATGTCCCCGCTCTATTA
TCCCCCCCCCCTACGCTTTTTTCTATCATTGTTATAATTACCCCGTTTCC
TTTCCTTTTTTCCTGCCCATTTATCTTCCTTTGACGGCTTGTTTATGACC
CCGTATTTTTTTCCTTTCCTTTCCTGTTTTTCTCTCTCTTTTGTCCTTTT
CTTTTTTTTTCCCCCCTCTCCCCTTTCCTCACTTTTTTCTCCGGGTATTA
GTCACCCATTCTCTTAAGCTTTGTTTTCTTACCCCTCCCTCTCCTCTTTT
CATTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_e02.b1 MSMg01no194_e02.b1 CHROMAT_FILE:
MSMg01no194_e02.b1 PHD_FILE: MSMg01no194_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:04 2005
         (604 letters)



>mm_chr12_52346671_52347673
          Length = 1003

 Score = 1083 bits (560), Expect = 0.0
 Identities = 593/604 (98%), Gaps = 1/604 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtctggtggcaggtgcctttacccactgagtcagctctctgctctaccccaattagaagc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 803 gtctggtggcaggtgcctttacccactgagtcagctctctgccctaccccaattagaagc 744

                                                                       
Query: 61  tacagtcaaattgtctttatacattctttctagtgtgcttccaaaatacctcctactaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tacagtcaaattgtctttatacattctttctagtgtgcttccaaaatacctcctactaac 684

                                                                       
Query: 121 tattgcttctctaaagtcatcattacatatagaattagggtcctgaagttaccttcacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tattgcttctctaaagtcatcattacatatagaattagggtcctgaagttaccttcacag 624

                                                                       
Query: 181 ccttcctattttactctttttacatttaatgttcttgaatgaaattatatgtgtattaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccttcctattttactctttttacatttaatgttcttgaatgaaattatatgtgtattaga 564

                                                                       
Query: 241 gttctacagtttatatttctaaagccacaccaaatttctctgcaaagttatatcttatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gttctacagtttatatttctaaagccacaccaaatttctctgcaaagttatatcttatct 504

                                                                       
Query: 301 aggattcgagacgtctatgacaatggttcctcacttagaatggtgtcaggaattataatc 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 503 aggattcgagacgtctatgacaatggttcctcacttagaatggtgccaggaattataatc 444

                                                                       
Query: 361 aactctgaaggtttttcctgttctgagataagcttagtttcagaagcaattgaactttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aactctgaaggtttttcctgttctgagataagcttagtttcagaagcaattgaactttga 384

                                                                       
Query: 421 gcattattaactggctacaaaggaggggaaataggtcaggaggcaagaaagggcagaagg 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcattattaactggttacaaaggaggggaaataggtcaggaggcaagaaagggcagaagg 324

                                                                       
Query: 481 aaatttatgaacagcaaagaaaagaataataggacggaggtcatctgtttcaagctgaga 540
           ||||||| |||||||| ||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 323 aaatttaggaacagcagagaaaagaatagtaagacagaggtcatctgtttcaagctgaga 264

                                                                       
Query: 541 tttgaggtatcttgtagaaagctggttttaaattcatttttttcctttcaaatttgccaa 600
           |||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct: 263 tttgaggtatcttgtagaaagctggttttaaatttatttttt-cctttcgaatttgccaa 205

               
Query: 601 agaa 604
           ||||
Sbjct: 204 agaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1003
Length adjustment: 10
Effective length of query: 594
Effective length of database: 993
Effective search space:   589842
Effective search space used:   589842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)