BAC Information

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BAC

Clone NameMSMg01-194J02
Chromosome12 (Build37)
Map Location 59,672,520 - 59,673,108
singlet/doubletsinglet
Overlap genenone
Upstream gene4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
Downstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194J02.T7 (MSMg01no194_j02.b1)MSMg01-194J02.TJ (MSMg01no194_j02.g1)
ACCAG383440AG383441
length729732
length of high quality
(start - end)
587 (45 - 631)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no194_j02.b1 PHD_FILE: MSMg01no194_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:28 2005CHROMAT_FILE: MSMg01no194_j02.g1 PHD_FILE: MSMg01no194_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
GTTGAAATAATAGATATTTATTTCATCACAATTCTAGGGAGTAGAATTTC
AAGGTCAAGTTTTCAAGGTTCAGGCACATCCGGTTCAGCGTGTGGTTGAG
GGCTGTGCTTATCTCCTGCAGAGGGTGCTCGTCTTGCTATGCCCTCATCG
TCTTTTCTACTGTGTGCCCAGAGGAATAATAAGCTCTCTGCAGTCTCTTC
CTAAAAGGACACTAGTTTTATCAAACCAGAGTCCACTTTCATCTAACCTT
AATATCTTTCTCATTCTAACTACAGCCTTCAGTGTATGAAACTGGGTGGA
AGGGAGTAGGGCAGAGGACATAATCATTCAGATCACACCTCTGGGGAGAT
TGTCTCAATCCAGCACCTACAGAATCTGCAGCTGTGCAGTCACAAATAGC
AGTGCCTCCAATGAGGTATCAGCATAAGGCAAAGGACCAGGTGCTAAAGA
TTTGCATCCTAGAACGTCTTAAGCAGTTTTCTACAAGACGCTTCCATACT
TGGTCTTGAAAATAGTAGAATTTGAGATGTCATTACCAAAACTTCTTATA
CAACTTTGGATCTTGCCAAAACTTTTTGAGAAACACTGGCCTGGGGACTT
CTATTTTAGAGTTGTAATAATTATTTTTATTGATTGTCTCATAGTAAATT
TCATAAAAATCACATAAATTGTGTAATTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTTGCTCTGTACCCCATTT
TTAATAGGGTTATTTCGTTCTCTGAAGTCTACCTTCTTGAGTTCTTTGTT
ATATATTGGATATTAGCCCTCTATCAGATGTAAGGTTGGTAAAGATCTTC
TCCCAATCTGTTGGTGGCCCTTTTGTCCTATTGACAGTGTCCTTTGCCTT
ACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGACAATTCTTGATCTTA
GAGCATAAGCTATTGGTGTTCTGTTCAGGAAATTTCCCCCCAAACAGGAC
TTGTAGATTACACTTTATTTAACACTGCCCTCTCTACTGACCTAGATAGC
CATTCTTTATCCCACACCTACCCAAGTCAGAATTGTTTTATGCCTTACTT
ATTATTGTTTTTCAGTATCCCCTTTTCCCAGCTAGGATATAAGACCCATG
AGGAATGAAACCTCTGTTTTATTCTCATGAAATCCTCCTAACAAATCCCT
GGTCGAGATTTGCCAATATTCAATAAATAATCACTGAGTATTAAATTAAT
AAAAAGGTGTTCTANTTAAAAGTATGCAATAAATGTTACTTCTCTTCTTT
TTAAAGAAGAAATCTGTCCTCCTAGAATATAATGCTGAGCATGTAACAAT
CTAAACCAACACATAAGCTTCTCCTCTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_j02.b1 MSMg01no194_j02.b1 CHROMAT_FILE:
MSMg01no194_j02.b1 PHD_FILE: MSMg01no194_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:28 2005
         (587 letters)



>mm_chr12_59672317_59673308
          Length = 992

 Score = 1015 bits (525), Expect = 0.0
 Identities = 571/589 (96%), Gaps = 5/589 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggagttgaaataatagatatttatttcatcacaattctagggagtagaatttcaaggtca 63
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 792 ggagttgaaataatagatatttatttcatcacaattctagggagtcgaagttcaaggtca 733

                                                                       
Query: 64  agttttcaaggttcaggcacatccggttcagcgtgtggttgagggctgtgcttatctcct 123
           |||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 732 agttttcaaggttcaggcacatccggttcatcatgcggttgagggctgtgcttatctcct 673

                                                                       
Query: 124 gcagagggtgctcgtcttgctatgccctcatcgtcttttctactgtgtgcccagaggaat 183
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 672 gcagagggtgctcatcttgctatgtcctcatcgtcttttctactgtgtgcccagaggaat 613

                                                                       
Query: 184 aataagctctctgcagtctcttcctaaaaggacactagttttatcaaaccagagtccact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aataagctctctgcagtctcttcctaaaaggacactagttttatcaaaccagagtccact 553

                                                                       
Query: 244 ttcatctaaccttaatatctttctcattctaactacagccttcagtgtatgaaactgggt 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttcctctaaccttaatatctttctcattctaactacagccttcagtgtatgaaactgggt 493

                                                                       
Query: 304 ggaagggagtagggcagaggacataatcattcagatcacacctctggggagattgtctca 363
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gggagggagtagggcagaggacataatcattcagatcacacctctggggagattgtctca 433

                                                                       
Query: 364 atccagcacctacagaatctgcagctgtgcagtcacaaatagcagtgcctccaatgaggt 423
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atccagcacctatagaatctgcagctgtgcagtcacaaatagcagtgcctccaatgaggt 373

                                                                       
Query: 424 atcagcataaggcaaaggaccaggtgctaaagatttgcatcctagaacgtcttaagcagt 483
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 372 atcagcataaggcaaaggaccaggtgctaaagatttgcatcctggaacgtcttaagcagt 313

                                                                       
Query: 484 tttctacaagacgcttccatacttgg-----tcttgaaaatagtagaatttgagatgtca 538
           ||||||||||||||||||||||||||     |||||||||||||||||||||||||||||
Sbjct: 312 tttctacaagacgcttccatacttggtcagttcttgaaaatagtagaatttgagatgtca 253

                                                            
Query: 539 ttaccaaaacttcttatacaactttggatcttgccaaaactttttgaga 587
            ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctaccaaaactttttatacaactttggatcttgccaaaactttttgaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 992
Length adjustment: 10
Effective length of query: 577
Effective length of database: 982
Effective search space:   566614
Effective search space used:   566614
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)