BAC Information

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BAC

Clone NameMSMg01-195A07
Chromosome12 (Build37)
Map Location 39,696,453 - 39,696,745
singlet/doubletsinglet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195A07.T7 (MSMg01no195_a07.b1)MSMg01-195A07.TJ (MSMg01no195_a07.g1)
ACCAG383710AG383711
length726736
length of high quality
(start - end)
323 (45 - 367)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no195_a07.b1 PHD_FILE: MSMg01no195_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:05 2005CHROMAT_FILE: MSMg01no195_a07.g1 PHD_FILE: MSMg01no195_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCCGCTTCCATGTGAAGTTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTA
TCCTTGAGAAGACTTTTTGCTATCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTCCTCTGCATTGTTTTGAA
AGAATATTTTCAAAATTTGGTGAGACTTGCCCTCACCCCCCACCATCACC
ACCAAGAGCTGTTGCCAGCTTCCCCCTGAGTACCAAGTCCAATTCTGATG
AATGTCTGAAGCTTTCCCTACAACTGGACAAACCATTCTGAGTGATTGTC
CACCTCAGCTTTAAAATCTTGTAGTTTCTATATTATTGGACTTTGATATA
CATTGTTCTAAACAAGCAAAATTATAAATGGAAAAATCTGAGACTCCCCA
TGTGAATTCAGGATTTGTTATTTGCCCCCCACCCCACCAGTCAAAAGAGC
AACAAGTTATCTCATTTCTTAATGCCCCGTCTAAAGCTTTGGAATAGGCT
ATTGACTCCAACTTCCTGAACTGTTTTTCTACTTGAAAAATCAATGTGAG
AAAAAATATAGACATATATGTGAAAATACAATTATGAAAACTTATTATTG
TATATCTTCTCTTANAAATTAATCATAAACTTCCTATTCTATTAGGTACA
GTGTATTTGGATTTATAATAACATCCTTGATCCACTTGGACTTGAGCTTT
ATGCAGGGTGATAAATATGGATCAATTTGCATTCTTCCACATGCAGACCA
CCAGTTAGACCAGTACCATTTGTTGAAGATGATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_a07.g1 MSMg01no195_a07.g1 CHROMAT_FILE:
MSMg01no195_a07.g1 PHD_FILE: MSMg01no195_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:05 2005
         (292 letters)



>mm_chr12_39696253_39696945
          Length = 693

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%), Gaps = 1/293 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctctcctctgcattgttttgaaagaatattttcaaaatttggtgagacttgccctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcctctcctctgcattgttttgaaagaatattttcaaaatttggtgagacttgccctcac 434

                                                                       
Query: 61  cccccaccatcaccaccaagagctgttgccagcttccccctgagtaccaagtccaattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cccccaccatcaccaccaagagctgttgccagcttccccctgagtaccaagtccaattct 374

                                                                       
Query: 121 gatgaatgtctgaagctttccctacaactggacaaaccattctgagtgattgtccacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gatgaatgtctgaagctttccctacaactggacaaaccattctgagtgattgtccacctc 314

                                                                       
Query: 181 agctttaaaatcttgtagtttctatattattggactttgatatacattgttctaaacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agctttaaaatcttgtagtttctatattattggactttgatatacattgttctaaacaag 254

                                                                
Query: 241 caaaattataaatgg-aaaaatctgagactccccatgtgaattcaggatttgt 292
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 253 caaaattataaatggaaaaaatctgagactccccatgtgaattcaggatttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)