Query= MSMg01no195_h18.b1 MSMg01no195_h18.b1 CHROMAT_FILE:
MSMg01no195_h18.b1 PHD_FILE: MSMg01no195_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:43 2005
(689 letters)
>mm_chr12_101659890_101660978
Length = 1089
Score = 1228 bits (635), Expect = 0.0
Identities = 673/689 (97%), Gaps = 8/689 (1%)
Strand = Plus / Plus
Query: 5 gaattctgctcctatccca-gagtccagagcagtggcagagtagcgcaggcctgaggctg 63
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctcctaaacaaagagtccagagcagtggcagagtagcgcaggcctgaggctg 264
Query: 64 gtcaaatgagggtggcatcccagaacagcagggaaggggtgccacattttaaatattaga 123
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 gtcaaatgagggtggcatcccagaacagcagggaaggggtgccacgttttaaatattaga 324
Query: 124 aatagtcacaagcaccctaaataccaagttcttcaattctcaccaaacagtctataacaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatagtcacaagcaccctaaataccaagttcttcaattctcaccaaacagtctataacaa 384
Query: 184 acaaacattttaaagtcagatattactcaatcacttcctattcgccactgaacagaaaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaaacattttaaagtcagatattactcaatcacttcctattcgccactgaacagaaaaa 444
Query: 244 tttttaaaaagctacatgtttaatcatgatagcaaggaagaaaaaggaggaaaatgaaaa 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 a----aaaaagctacatgtttaatcatgatagcaaggaagaaaaaggaggaaaatgaaaa 500
Query: 304 aaaaaa---cccacatgattgctttcatatttctaaactattagtttgtccctaaaatgc 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaaaaacccacatgattgctttcatatttctaaactattagtttgtccctaaaatgc 560
Query: 361 tgaggcccattaaatagctagaacaaactgttgcttaaagtttccactcaaagttgaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggcccattaaatagctagaacaaactgttgcttaaagtttccactcaaagttgaaca 620
Query: 421 tcagaacacctggttctgagggtttccacagactcctgacaggaggtcatttattccatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagaacacctggttctgagggtttccacagactcctgacaggaggtcatttattccatt 680
Query: 481 tcaccgcccttgactgagatggtatgatgatgtcagaactcactatggtaaggtttttgc 540
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 681 tcaccgcccttgactgagatggtacgatgatgtcagaactcactacggtaaggtttttgc 740
Query: 541 caggatcaagcagcacactctggcaaggtgtcagagcctgggtcgactcctgcactttgc 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 741 caggatcaagcagcacactctggcaaggtgtcagagcctgggtcgtctcctgcactttgc 800
Query: 601 tttctgtgctgggtgtgtttcccccaggttggagcagctccaacaactcagctaagacca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttctgtgctgggtgtgtttcccccaggttggagcagctccaacaactcagctaagacca 860
Query: 661 gggaggaaagcgcctgcaatctttaggac 689
|||||||||||||||||||||||||||||
Sbjct: 861 gggaggaaagcgcctgcaatctttaggac 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_h18.g1 MSMg01no195_h18.g1 CHROMAT_FILE:
MSMg01no195_h18.g1 PHD_FILE: MSMg01no195_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:43 2005
(573 letters)
>mm_chr12_101749537_101750509
Length = 973
Score = 922 bits (477), Expect = 0.0
Identities = 498/505 (98%)
Strand = Plus / Minus
Query: 69 gagaagctcactgagatggagtctagctcccgtgtgactagttttcctatgttcctatca 128
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 973 gagaagctcactgagatggagtctagctcccgtgtgactagttttcctatcttcctatca 914
Query: 129 ctctggtttttctgaccagttggattacagaatcactgagatagcttatttagagtctag 188
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 ctctggtttttctgaccagatggattacagaatcactgagatagcttatttagagtctag 854
Query: 189 gttaccaagctccactcctggagatcccgtgcagcaggtctcggaggggtctgcattcct 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gttaccaagctccactcctggagatcccgtgcagcaggtctcggaggggtctgcattcct 794
Query: 249 aaccagcccccaggtggtgccaagggtacccagccttgtcatggtgtgagagaggctctg 308
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 793 aaccagcccccaggtggtgccaagggtacccagccttgtcatggtgtgagacaggctctg 734
Query: 309 ggcattacagattttcagacaagtcttggaggagactcttgacaagtggtgatctttttg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggcattacagattttcagacaagtcttggaggagactcttgacaagtggtgatctttttg 674
Query: 369 gctaaggcagaggctcaaactctgcatttttaagcagaactttgtggcttgaactggcag 428
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 673 gctaaggcagaggctcaaactctgcatttttaagcagaactttgtggcttggactggcag 614
Query: 429 ctgttaggccctttctttgaaatcatagtaattaatgagcacctactgtatgcagagcac 488
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctgttaggcccttgctttgaaatcatagtaattaatgagcacctactgtatgcagagcac 554
Query: 489 catggtagacaaagcaccaccatggtggcagaaggacaccagaaaaataggatgagtagg 548
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 catgatagacaaagcaccaccatggtggcagaaggacaccagaaaaataggatgagtagg 494
Query: 549 tcacctcagcaacttttacagttca 573
||||| |||||||||||||||||||
Sbjct: 493 tcaccccagcaacttttacagttca 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
